Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
3180629a by Andreas Tille at 2021-07-27T13:42:21+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,61 +1,60 @@
-Last-Update: Tue, 27 Jul 2021 01:42:03 +0000
+Last-Update: Tue, 27 Jul 2021 13:42:04 +0000
 
  Source                        | Vote   |     Tasks                            
               |                                 Tags                           
      
 
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    168 | {covid-19,imaging}                   
               | 
- orthanc                       |     96 | {imaging,covid-19,practice}          
               | 
- orthanc-wsi                   |     52 | 
{imaging,practice,his,covid-19,oncology,laboratory} | 
- dicomscope                    |     32 | {imaging}                            
               | 
- amide                         |     30 | {imaging}                            
               | 
+ dcmtk                         |    165 | {covid-19,imaging}                   
               | 
+ orthanc                       |     94 | {imaging,covid-19,practice}          
               | 
+ orthanc-wsi                   |     50 | 
{imaging,practice,his,covid-19,oncology,laboratory} | 
+ dicomscope                    |     30 | {imaging}                            
               | 
  gdcm                          |     29 | {imaging-dev}                        
               | 
- gdcm                          |     28 | {covid-19,imaging}                   
               | 
- dicom3tools                   |     27 | {imaging}                            
               | 
- dcm2niix                      |     24 | {imaging}                            
               | 
- htsjdk                        |     24 | {bio-dev}                            
               | 
- odin                          |     18 | {imaging-dev,imaging}                
               | 
- minc-tools                    |     15 | {imaging}                            
               | 
+ amide                         |     28 | {imaging}                            
               | 
+ gdcm                          |     27 | {covid-19,imaging}                   
               | 
+ dicom3tools                   |     26 | {imaging}                            
               | 
+ dcm2niix                      |     23 | {imaging}                            
               | 
+ htsjdk                        |     22 | {bio-dev}                            
               | 
+ odin                          |     17 | {imaging-dev,imaging}                
               | 
  orthanc-webviewer             |     15 | {imaging}                            
               | 
  gnumed-server                 |     14 | {covid-19,practice}                  
               | 
- pixelmed                      |     14 | {imaging}                            
               | 
- invesalius                    |     13 | {imaging}                            
               | 
- gdcm                          |     12 | {imaging-dev}                        
               | 
+ minc-tools                    |     14 | {imaging}                            
               | 
  insighttoolkit4               |     12 | {imaging-dev}                        
               | 
- nifticlib                     |     12 | {imaging}                            
               | 
- dicomnifti                    |     11 | {imaging}                            
               | 
- adun.app                      |      9 | {bio}                                
               | 
+ invesalius                    |     12 | {imaging}                            
               | 
+ pixelmed                      |     12 | {imaging}                            
               | 
+ gdcm                          |     11 | {imaging-dev}                        
               | 
+ nifticlib                     |     10 | {imaging}                            
               | 
+ dicomnifti                    |      9 | {imaging}                            
               | 
  mia                           |      9 | {imaging}                            
               | 
- ngs-sdk                       |      9 | {bio-dev}                            
               | 
- openslide                     |      9 | {imaging}                            
               | 
- plastimatch                   |      9 | {imaging}                            
               | 
+ adun.app                      |      8 | {bio}                                
               | 
  libminc                       |      8 | {imaging-dev}                        
               | 
- king                          |      7 | {imaging,typesetting}                
               | 
- nifti2dicom                   |      7 | {imaging}                            
               | 
+ ngs-sdk                       |      8 | {bio-dev}                            
               | 
+ openslide                     |      8 | {imaging}                            
               | 
+ plastimatch                   |      8 | {imaging}                            
               | 
  nifticlib                     |      7 | {imaging-dev}                        
               | 
+ king                          |      6 | {imaging,typesetting}                
               | 
  libdivsufsort                 |      6 | {bio-dev}                            
               | 
  ngs-sdk                       |      6 | {bio-dev}                            
               | 
  orthanc-dicomweb              |      6 | {covid-19,imaging}                   
               | 
  orthanc-postgresql            |      6 | {imaging}                            
               | 
- oscar                         |      6 | {tools,data,practice}                
               | 
  dicompyler                    |      5 | {oncology}                           
               | 
  ea-utils                      |      5 | {bio}                                
               | 
+ nifti2dicom                   |      5 | {imaging}                            
               | 
+ oscar                         |      5 | {tools,data,practice}                
               | 
  salmid                        |      5 | {bio}                                
               | 
  bart-view                     |      4 | {imaging}                            
               | 
  jebl2                         |      4 | {bio-dev}                            
               | 
  librg-utils-perl              |      4 | {bio}                                
               | 
- nifti2dicom                   |      4 | {imaging}                            
               | 
  orthanc-mysql                 |      4 | {imaging}                            
               | 
- sight                         |      4 | {imaging}                            
               | 
  biojava-live                  |      3 | {bio-dev}                            
               | 
  blasr                         |      3 | {bio,bio-ngs}                        
               | 
  busco                         |      3 | {bio,covid-19}                       
               | 
  elastix                       |      3 | {imaging}                            
               | 
  embassy-domainatrix           |      3 | {cloud,bio}                          
               | 
- libsbml                       |      3 | {bio-dev}                            
               | 
  melting                       |      3 | {cloud,bio}                          
               | 
+ nifti2dicom                   |      3 | {imaging}                            
               | 
  obitools                      |      3 | {bio}                                
               | 
  openslide                     |      3 | {imaging-dev}                        
               | 
  pymia                         |      3 | {imaging-dev}                        
               | 
  salmon                        |      3 | {bio,covid-19}                       
               | 
+ sight                         |      3 | {imaging}                            
               | 
  treeview                      |      3 | {bio-phylogeny,bio}                  
               | 
  beast-mcmc                    |      2 | {bio-phylogeny,bio}                  
               | 
  bitseq                        |      2 | {bio}                                
               | 
@@ -68,15 +67,13 @@ Last-Update: Tue, 27 Jul 2021 01:42:03 +0000
  jellyfish1                    |      2 | {bio}                                
               | 
  lagan                         |      2 | {bio}                                
               | 
  libpal-java                   |      2 | {bio-dev}                            
               | 
+ libsbml                       |      2 | {bio-dev}                            
               | 
  ngs-sdk                       |      2 | {bio-dev}                            
               | 
- nipype                        |      2 | {imaging-dev,imaging}                
               | 
  orthanc-gdcm                  |      2 | {imaging}                            
               | 
- papyrus                       |      2 | {imaging-dev}                        
               | 
  pbdagcon                      |      2 | {bio}                                
               | 
  phyutility                    |      2 | {bio,cloud}                          
               | 
  saint                         |      2 | {bio}                                
               | 
  stacks                        |      2 | {bio}                                
               | 
- staden                        |      2 | {bio}                                
               | 
  tracetuner                    |      2 | {bio}                                
               | 
  anfo                          |      1 | {bio,cloud}                          
               | 
  bamkit                        |      1 | {bio,covid-19}                       
               | 
@@ -89,7 +86,6 @@ Last-Update: Tue, 27 Jul 2021 01:42:03 +0000
  estscan                       |      1 | {bio}                                
               | 
  fsm-lite                      |      1 | {bio}                                
               | 
  gatb-core                     |      1 | {bio}                                
               | 
- gifticlib                     |      1 | {imaging-dev}                        
               | 
  ipig                          |      1 | {bio}                                
               | 
  jmodeltest                    |      1 | {bio-phylogeny,bio}                  
               | 
  lamarc                        |      1 | {bio}                                
               | 
@@ -101,8 +97,10 @@ Last-Update: Tue, 27 Jul 2021 01:42:03 +0000
  metaphlan2                    |      1 | {bio}                                
               | 
  mhap                          |      1 | {bio,bio-ngs}                        
               | 
  microbegps                    |      1 | {bio}                                
               | 
+ nipype                        |      1 | {imaging-dev,imaging}                
               | 
  opencfu                       |      1 | {laboratory}                         
               | 
  orthanc-python                |      1 | {covid-19}                           
               | 
+ papyrus                       |      1 | {imaging-dev}                        
               | 
  paraclu                       |      1 | {cloud,bio}                          
               | 
  perm                          |      1 | {cloud,bio}                          
               | 
  piler                         |      1 | {bio}                                
               | 
@@ -119,6 +117,7 @@ Last-Update: Tue, 27 Jul 2021 01:42:03 +0000
  spaced                        |      1 | {bio}                                
               | 
  sprai                         |      1 | {bio}                                
               | 
  spread-phy                    |      1 | {bio,bio-phylogeny}                  
               | 
+ staden                        |      1 | {bio}                                
               | 
  zalign                        |      1 | {cloud,bio}                          
               | 
  acedb                         |      0 | {bio,cloud}                          
               | 
  arden                         |      0 | {cloud,bio}                          
               | 
@@ -142,6 +141,7 @@ Last-Update: Tue, 27 Jul 2021 01:42:03 +0000
  fis-gtm                       |      0 | {his}                                
               | 
  gatb-core                     |      0 | {bio-dev}                            
               | 
  ghmm                          |      0 | {bio}                                
               | 
+ gifticlib                     |      0 | {imaging-dev}                        
               | 
  hinge                         |      0 | {bio}                                
               | 
  htscodecs                     |      0 | {covid-19,bio-dev}                   
               | 
  intake                        |      0 | {bio-dev,bio}                        
               | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3180629a1c7f83bcbd4120702170c82e1f354185

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3180629a1c7f83bcbd4120702170c82e1f354185
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