Nilesh Patra pushed to branch master at Debian Med / bamkit
Commits: 228a31b6 by Nilesh Patra at 2021-08-05T00:55:14+05:30 Add python3-pysam to Depends - - - - - 159db09d by Nilesh Patra at 2021-08-05T00:55:42+05:30 Declare compliance with policy 4.5.1 - - - - - 2142c6e0 by Nilesh Patra at 2021-08-05T00:56:18+05:30 Minor fix - - - - - a4c1b3ec by Nilesh Patra at 2021-08-05T00:57:17+05:30 Interim changelog entry - - - - - 4 changed files: - debian/changelog - debian/control - debian/tests/control - debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,15 @@ bamkit (0.0.1+git20170413.ccd079d-3) UNRELEASED; urgency=medium * Team Upload. + [ Shruti Sridhar ] * Add autopkgtests * Install docs - -- Shruti Sridhar <[email protected]> Wed, 04 Aug 2021 23:39:29 +0530 + [ Nilesh Patra ] + * Add python3-pysam to Depends + * Declare compliance with policy 4.5.1 + + -- Nilesh Patra <[email protected]> Thu, 05 Aug 2021 00:56:34 +0530 bamkit (0.0.1+git20170413.ccd079d-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -6,7 +6,7 @@ Uploaders: Andreas Tille <[email protected]> Build-Depends: debhelper-compat (= 13), dh-python, python3 -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bamkit Vcs-Git: https://salsa.debian.org/med-team/bamkit.git Homepage: https://github.com/hall-lab/bamkit @@ -15,7 +15,8 @@ Rules-Requires-Root: no Package: bamkit Architecture: all Depends: ${python3:Depends}, - ${misc:Depends} + ${misc:Depends}, + python3-pysam Description: tools for common BAM file manipulations This package provides some Python3 tools for common BAM file manipulations. ===================================== debian/tests/control ===================================== @@ -1,3 +1,3 @@ Tests: run-unit-test -Depends: @, python3-pysam, samtools +Depends: @, samtools Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -23,5 +23,5 @@ samtools addreplacerg -r ID:S1 -r LB:L1 -r SM:SAMPLE1 -o output reads.bam bamlibs.py reads.bam bamcleanheader.py reads.bam > output bamfilterrg.py -i reads.bam > filter -[ -s "output" ] && [ -s "filter" ] || exit 1 && echo "PASS Tests" - +[ -s "output" ] && [ -s "filter" ] || exit 1 +echo "PASS Tests" View it on GitLab: https://salsa.debian.org/med-team/bamkit/-/compare/e4786063b10c090a5cffb0b0ed438b8a526a51d1...a4c1b3ec1cf80f27f6109762d2084a9b3d8cfe95 -- View it on GitLab: https://salsa.debian.org/med-team/bamkit/-/compare/e4786063b10c090a5cffb0b0ed438b8a526a51d1...a4c1b3ec1cf80f27f6109762d2084a9b3d8cfe95 You're receiving this email because of your account on salsa.debian.org.
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