Pierre Gruet pushed to branch master at Debian Med / libgoby-java
Commits: 02da5659 by Pierre Gruet at 2021-08-10T14:09:34+02:00 Forwarding patches - - - - - 6 changed files: - debian/patches/adding_dependencies.patch - debian/patches/catch_IOException_LineIterator.patch - debian/patches/goby_script.patch - debian/patches/inclusions_in_SplitTranscriptsMode.patch - debian/patches/protoc.patch - debian/patches/using_correct_SamReader_api.patch Changes: ===================================== debian/patches/adding_dependencies.patch ===================================== @@ -1,5 +1,6 @@ -Description: Adding missing dependencies to goby-io/pom.xml +Description: Adding missing dependencies to the various pom.xml files Author: Pierre Gruet <[email protected]> +Forwarded: https://github.com/CampagneLaboratory/goby3/issues/6 Last-Update: 2020-10-31 --- a/goby-io/pom.xml ===================================== debian/patches/catch_IOException_LineIterator.patch ===================================== @@ -1,6 +1,6 @@ Description: Catch the IOException launched by close() method of LineIterator Author: Pierre Gruet <[email protected]> -Forwarded: no +Forwarded: https://github.com/CampagneLaboratory/goby3/issues/7 Last-Update: 2020-11-03 --- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/EmpiricalPMode.java ===================================== debian/patches/goby_script.patch ===================================== @@ -1,6 +1,6 @@ Description: modifying the launcher script to account for Debian paths Author: Pierre Gruet <[email protected]> -Forwarded: no +Forwarded: not-needed Last-Update: 2021-08-08 --- a/goby ===================================== debian/patches/inclusions_in_SplitTranscriptsMode.patch ===================================== @@ -1,7 +1,7 @@ Description: reading class GeneTranscriptRelationships from Goby archive The above-named class is in the archive of Goby and thus does not need to be read elsewhere. Author: Pierre Gruet <[email protected]> -Forwarded: no +Forwarded: https://github.com/CampagneLaboratory/goby3/issues/8 Last-Update: 2020-11-02 --- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/SplitTranscriptsMode.java ===================================== debian/patches/protoc.patch ===================================== @@ -1,5 +1,6 @@ Description: Using Debian-packaged protoc compiler Author: Pierre Gruet <[email protected]> +Forwarded: not-needed Last-Update: 2020-08-24 --- a/goby-io/pom.xml ===================================== debian/patches/using_correct_SamReader_api.patch ===================================== @@ -1,7 +1,7 @@ Description: using the correct SamReader api Author: Pierre Gruet <[email protected]> Origin: https://sources.debian.org/src/fastqc/0.11.9+dfsg-4/debian/patches/htsjdk-api.patch -Forwarded: no +Forwarded: not-needed Last-Update: 2020-11-06 --- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/SAMComparisonMode.java View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/commit/02da56598e67eaca2ff3ac81c285670fc76d12ad -- View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/commit/02da56598e67eaca2ff3ac81c285670fc76d12ad You're receiving this email because of your account on salsa.debian.org.
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