Étienne Mollier pushed to branch master at Debian Med / cd-hit
Commits: 92012d41 by Étienne Mollier at 2021-08-10T22:32:54+02:00 d/watch: fix broken link to github - - - - - 27c9a0f1 by Étienne Mollier at 2021-08-10T22:33:54+02:00 d/control: add myself to uploaders - - - - - 442a99cc by Étienne Mollier at 2021-08-10T22:34:20+02:00 update changelog - - - - - c5dc37a4 by Étienne Mollier at 2021-08-10T22:58:07+02:00 d/t/run-unit-test: disable memory limits in tests The memory consumption of cd-hit* is proportional to the cores count. Current implementation of autopkgtest limit the total memory consumption to 1000M. On machines with very high cores count, this amount is unsufficient. Let's pass -M 0 to not enforce any limit. Closes: #992052 - - - - - dc817a50 by Étienne Mollier at 2021-08-10T22:59:58+02:00 update changelog - - - - - 4 changed files: - debian/changelog - debian/control - debian/tests/run-unit-test - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +cd-hit (4.8.1-4) UNRELEASED; urgency=medium + + * d/watch: fix broken link to github + * d/control: add myself to uploaders + * d/t/run-unit-test: disable memory limits in tests (Closes: #992052) + + -- Étienne Mollier <[email protected]> Tue, 10 Aug 2021 22:58:40 +0200 + cd-hit (4.8.1-3) unstable; urgency=medium * Fix Homepage ===================================== debian/control ===================================== @@ -1,7 +1,8 @@ Source: cd-hit Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Tim Booth <[email protected]>, - Andreas Tille <[email protected]> + Andreas Tille <[email protected]>, + Étienne Mollier <[email protected]> Section: science Priority: optional Build-Depends: debhelper-compat (= 13), ===================================== debian/tests/run-unit-test ===================================== @@ -14,15 +14,15 @@ cd $AUTOPKGTEST_TMP find . -name "*.gz" -exec gunzip \{\} \; echo "==== CD_HIT ====" -cd-hit -i example.fa -o out -c 1.00 -n 5 -M 1000 -T 0 +cd-hit -i example.fa -o out -c 1.00 -n 5 -M 0 -T 0 echo "==== CD_HIT-2D ====" -cd-hit-2d -i example.fa -i2 example.fa -o out -c 0.9 -n 5 -M 1000 -T 0 +cd-hit-2d -i example.fa -i2 example.fa -o out -c 0.9 -n 5 -M 0 -T 0 echo "==== CD_HIT-EST ====" -cd-hit-est -i example.fa -o out -c 0.95 -n 10 -M 1000 -T 0 +cd-hit-est -i example.fa -o out -c 0.95 -n 10 -M 0 -T 0 echo "==== CD_HIT-EST-2D ====" -cd-hit-est-2d -i example.fa -i2 example.fa -o out -c 0.95 -n 10 -M 1000 -T 0 +cd-hit-est-2d -i example.fa -i2 example.fa -o out -c 0.95 -n 10 -M 0 -T 0 echo "==== CD_HIT-454 ====" -cd-hit-454 -i example.fa -o out -c 0.95 -n 10 -M 1000 -T 0 +cd-hit-454 -i example.fa -o out -c 0.95 -n 10 -M 0 -T 0 echo "==== CD_HIT-DIV ====" cd-hit-div example.fa output 4 for i in `ls ./*output*` ; do ===================================== debian/watch ===================================== @@ -1,2 +1,4 @@ version=4 -https://github.com/weizhongli/cdhit/releases .*/archive/V(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) +opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ +https://github.com/weizhongli/cdhit/tags \ +(?:.*?/)?[Vv]?(\d[\d.]*)\.tar\.gz debian uupdate View it on GitLab: https://salsa.debian.org/med-team/cd-hit/-/compare/b8a44570698ab500753c17d99f9c59e9a6c165db...dc817a506895f9ec3913ed030c96ed72f7be3c61 -- View it on GitLab: https://salsa.debian.org/med-team/cd-hit/-/compare/b8a44570698ab500753c17d99f9c59e9a6c165db...dc817a506895f9ec3913ed030c96ed72f7be3c61 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
