Steffen Möller pushed to branch master at Debian Med / emperor
Commits: 6df3c2b1 by Steffen Moeller at 2021-08-13T17:58:08+02:00 Cosmetics. - - - - - e6a16dad by Steffen Moeller at 2021-08-13T17:58:29+02:00 Fixing -doc build. - - - - - 8 changed files: - debian/control - + debian/patches/EditSectionTitle.patch - debian/patches/series - debian/python3-emperor-doc.doc-base - debian/python3-emperor-doc.docs - + debian/python3-emperor.lintian-overrides - debian/rules - debian/upstream/metadata Changes: ===================================== debian/control ===================================== @@ -2,7 +2,8 @@ Source: emperor Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Kerim Ölçer <[email protected]>, Afif Elghraoui <[email protected]>, - Liubov Chuprikova <[email protected]> + Liubov Chuprikova <[email protected]>, + Steffen Moeller <[email protected]> Section: science Priority: optional Build-Depends: debhelper-compat (= 13), @@ -51,22 +52,22 @@ Description: visualizing high-throughput microbial community data constitutes itself as the state of the art for analyzing N-dimensional data using principal coordinates analysis. -#Package: python3-emperor-doc -#Architecture: all -#Section: doc -#Depends: ${sphinxdoc:Depends}, -# ${misc:Depends}, -# libjs-twitter-bootstrap, -# libjs-jquery -#Description: visualizing high-throughput microbial community data -# Emperor is an interactive next generation tool for the analysis, -# visualization and understanding of high throughput microbial -# ecology datasets. -# . -# Due to its tailor-made graphical user interface, delving into a new -# dataset to elucidate the patterns hidden in the data, has never been -# easier. Emperor brings a rich set of customizations and modifications -# that can be integrated into any QIIME or scikit-bio compliant dataset; -# with lightweight data files and hardware accelerated graphics, -# constitutes itself as the state of the art for analyzing N-dimensional -# data using principal coordinates analysis. +Package: python3-emperor-doc +Architecture: all +Section: doc +Depends: ${sphinxdoc:Depends}, + ${misc:Depends}, + libjs-twitter-bootstrap, + libjs-jquery +Description: visualizing high-throughput microbial community data + Emperor is an interactive next generation tool for the analysis, + visualization and understanding of high throughput microbial + ecology datasets. + . + Due to its tailor-made graphical user interface, delving into a new + dataset to elucidate the patterns hidden in the data, has never been + easier. Emperor brings a rich set of customizations and modifications + that can be integrated into any QIIME or scikit-bio compliant dataset; + with lightweight data files and hardware accelerated graphics, + constitutes itself as the state of the art for analyzing N-dimensional + data using principal coordinates analysis. ===================================== debian/patches/EditSectionTitle.patch ===================================== @@ -0,0 +1,15 @@ +Index: emperor/emperor/core.py +=================================================================== +--- emperor.orig/emperor/core.py ++++ emperor/emperor/core.py +@@ -38,7 +38,9 @@ JUPYTER_PATH = 'jupyter-template.html' + + + class Emperor(object): +- """Display principal coordinates analysis plots ++ """ ++ Display principal coordinates analysis plots ++ ============================================ + + Use this object to interactively display a PCoA plot using the Emperor + GUI. IPython provides a rich display system that will let you display a ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ do_not_use_custom_numpydoc.patch correct_jsdoc_arguments.patch +EditSectionTitle.patch ===================================== debian/python3-emperor-doc.doc-base ===================================== @@ -1,9 +1,9 @@ Document: python3-emperor-doc -Title: emperor: -Author: Liubov Chuprikova -Abstract: +Title: emperor +Author: Authors of Emperor +Abstract: Documentation shipping with sources Section: Science/Biology Format: html -Index: /usr/share/doc/python3-emperor/html/index.html -Files: /usr/share/doc/python3-emperor/html/* +Index: /usr/share/doc/python3-emperor/jsdoc/index.html +Files: /usr/share/doc/python3-emperor/jsdoc/* ===================================== debian/python3-emperor-doc.docs ===================================== @@ -1 +1,2 @@ doc/build/html +doc/build/jsdoc ===================================== debian/python3-emperor.lintian-overrides ===================================== @@ -0,0 +1,3 @@ +# This substitutes the jquery-ui.min.css shipping with the source tree +python3-emperor: breakout-link usr/lib/python3/dist-packages/emperor/support_files/vendor/css/jquery-ui.min.css -> usr/share/javascript/jquery-ui/themes/base/jquery-ui.min.css + ===================================== debian/rules ===================================== @@ -1,7 +1,6 @@ #!/usr/bin/make -f -# See debhelper(7) (uncomment to enable) -# output every command that modifies files on the build system. -#export DH_VERBOSE = 1 + +export DH_VERBOSE = 1 export PYBUILD_NAME=emperor ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,4 @@ +--- Bug-Database: https://github.com/biocore/emperor/issues Bug-Submit: https://github.com/biocore/emperor/issues/new Reference: @@ -37,6 +38,10 @@ Registry: Entry: emperor - Name: bio.tools Entry: NA + Checked: 2021-08-13 + - Name: guix + Entry: NA + Checked: 2021-08-13 - Name: SciCrunch Entry: NA Repository: https://github.com/biocore/emperor.git View it on GitLab: https://salsa.debian.org/med-team/emperor/-/compare/ac60138ad8bae5df0e233ea6ebbed0858f6f9e3d...e6a16dadb8a75e8024ce3723e97fd53a7e07bf78 -- View it on GitLab: https://salsa.debian.org/med-team/emperor/-/compare/ac60138ad8bae5df0e233ea6ebbed0858f6f9e3d...e6a16dadb8a75e8024ce3723e97fd53a7e07bf78 You're receiving this email because of your account on salsa.debian.org.
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