Nilesh Patra pushed to branch master at Debian Med / ea-utils
Commits: d377a416 by Nilesh Patra at 2021-08-24T20:33:18+05:30 d/p/arm64.patch: Get autopkgtests running on !amd64 and !i386 - - - - - f1b97df3 by Nilesh Patra at 2021-08-24T20:40:53+05:30 Bump Standards-Version to 4.6.0 (no changes needed) - - - - - e3bf006d by Nilesh Patra at 2021-08-24T20:40:53+05:30 Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/arm64.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +ea-utils (1.1.2+dfsg-8) unstable; urgency=medium + + * Team Upload. + * d/p/arm64.patch: Get autopkgtests running on !amd64 and !i386 + * Bump Standards-Version to 4.6.0 (no changes needed) + + -- Nilesh Patra <[email protected]> Tue, 24 Aug 2021 20:35:08 +0530 + ea-utils (1.1.2+dfsg-7) unstable; urgency=medium [ Shruti Sridhar ] ===================================== debian/control ===================================== @@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev, libsparsehash-dev, -Standards-Version: 4.5.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ea-utils Vcs-Git: https://salsa.debian.org/med-team/ea-utils.git Homepage: https://expressionanalysis.github.io/ea-utils/ ===================================== debian/patches/arm64.patch ===================================== @@ -0,0 +1,91 @@ +Description: Get tests running on arm64 via fix with making char signed where needed +Author: Nilesh Patra <[email protected]> +Last-Update: 2021-08-24 +--- a/fastq-clipper.c ++++ b/fastq-clipper.c +@@ -46,7 +46,7 @@ + int hd(char *a, char *b, int n); + int debug=0; + int main (int argc, char **argv) { +- char c; ++ signed char c; + bool eol; + int nmin = 4, nkeep = 15, xmax=-1, pctdiff = 20; + char *outfile = NULL; +--- a/fastq-join.c ++++ b/fastq-join.c +@@ -35,7 +35,7 @@ + int debug=0; + + int main (int argc, char **argv) { +- char c; ++ signed char c; + int mismatch = 0; + char *in[3] = {0,0,0}; + char *out[5]; +--- a/fastq-mcf.c ++++ b/fastq-mcf.c +@@ -201,7 +201,7 @@ + }; + + int main (int argc, char **argv) { +- char c; ++ signed char c; + bool eol; + int nmin = 1, nkeep = 19, nmax=0; + int qf2_min_len=0; +--- a/fastq-multx.c ++++ b/fastq-multx.c +@@ -93,7 +93,7 @@ + static float pickmaxpct=0.10; + + int main (int argc, char **argv) { +- char c; ++ signed char c; + bool trim = true; + int mismatch = 1; + int distance = 2; +--- a/fastq-stats.cpp ++++ b/fastq-stats.cpp +@@ -170,7 +170,7 @@ + int main( int argc, char**argv ) { + + int index; +- char c; ++ signed char c; + optind = 0; + char *filename = NULL; + +--- a/sam-stats.cpp ++++ b/sam-stats.cpp +@@ -214,7 +214,7 @@ + bool multi=0, newonly=0, inbam=0; + int fq_out=0; + const char *rnafile = NULL; +- char c; ++ signed char c; + optind = 0; + struct option long_options[] = { + {"fastq", no_argument, NULL, 'o'}, +--- a/tidx/tidx.cpp ++++ b/tidx/tidx.cpp +@@ -36,7 +36,7 @@ + int skip_i = 0; + bool dump = 0; + +- char c; ++ signed char c; + while ( (c = getopt (argc, argv, "Dlhdt:r:c:b:T:e:p:i:s:a:nB")) != -1) { + switch (c) { + case 'd': +--- a/varcall.cpp ++++ b/varcall.cpp +@@ -273,7 +273,7 @@ + } + + int main(int argc, char **argv) { +- char c; ++ signed char c; + const char *noiseout=NULL; + const char *ref=NULL; + optind = 0; ===================================== debian/patches/series ===================================== @@ -2,3 +2,4 @@ makefile.patch hardening.patch name-space-conflict.patch cross.patch +arm64.patch View it on GitLab: https://salsa.debian.org/med-team/ea-utils/-/compare/76ec453d68af60a4b429e2da4cf1a7ef64c614c9...e3bf006d01905e2be8a4c2f69af7ad3f5ba37791 -- View it on GitLab: https://salsa.debian.org/med-team/ea-utils/-/compare/76ec453d68af60a4b429e2da4cf1a7ef64c614c9...e3bf006d01905e2be8a4c2f69af7ad3f5ba37791 You're receiving this email because of your account on salsa.debian.org.
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