Andreas Tille pushed to branch master at Debian Med / pilon
Commits:
2eada9a2 by Andreas Tille at 2021-10-01T16:48:57+02:00
Add TODO
- - - - -
1 changed file:
- debian/changelog
Changes:
=====================================
debian/changelog
=====================================
@@ -7,6 +7,16 @@ pilon (1.24-1) UNRELEASED; urgency=medium
[ Steffen Moeller ]
* Fix watchfile to detect new versions on github (routine-update)
+ TODO:
+...
+src/main/scala/org/broadinstitute/pilon/PileUpRegion.scala:136: error: value
asScala is not a member of java.util.List[htsjdk.samtools.CigarElement]
+ val cigarElements = cigar.getCigarElements.asScala
+ ^
+src/main/scala/org/broadinstitute/pilon/Scaffold.scala:351: error: value
asScala is not a member of htsjdk.samtools.SAMRecordIterator
+ for (read <- reader.iterator.asScala if (!read.getReadUnmappedFlag)) {
+ ^
+10 errors found
+
-- Andreas Tille <[email protected]> Thu, 09 Sep 2021 08:21:06 +0200
pilon (1.23+dfsg-2) unstable; urgency=medium
View it on GitLab:
https://salsa.debian.org/med-team/pilon/-/commit/2eada9a2760773c70d5cfa0b2623fc30578fdb95
--
View it on GitLab:
https://salsa.debian.org/med-team/pilon/-/commit/2eada9a2760773c70d5cfa0b2623fc30578fdb95
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