Author: mhekkel-guest Date: 2012-04-18 11:10:22 +0000 (Wed, 18 Apr 2012) New Revision: 10402
Added: trunk/packages/dssp/trunk/debian/ trunk/packages/dssp/trunk/debian/changelog trunk/packages/dssp/trunk/debian/compat trunk/packages/dssp/trunk/debian/control trunk/packages/dssp/trunk/debian/copyright trunk/packages/dssp/trunk/debian/patches/ trunk/packages/dssp/trunk/debian/patches/makefile trunk/packages/dssp/trunk/debian/patches/series trunk/packages/dssp/trunk/debian/rules trunk/packages/dssp/trunk/debian/source/ trunk/packages/dssp/trunk/debian/source/format trunk/packages/dssp/trunk/debian/watch Log: import Added: trunk/packages/dssp/trunk/debian/changelog =================================================================== --- trunk/packages/dssp/trunk/debian/changelog (rev 0) +++ trunk/packages/dssp/trunk/debian/changelog 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1,5 @@ +dssp (2.0.4-1) UNRELEASED; urgency=low + + * Initial release. (Closes: #XXXXXX) + + -- Maarten L. Hekkelman <maarten@mrs> Wed, 18 Apr 2012 11:09:02 +0200 Added: trunk/packages/dssp/trunk/debian/compat =================================================================== --- trunk/packages/dssp/trunk/debian/compat (rev 0) +++ trunk/packages/dssp/trunk/debian/compat 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1 @@ +7 Added: trunk/packages/dssp/trunk/debian/control =================================================================== --- trunk/packages/dssp/trunk/debian/control (rev 0) +++ trunk/packages/dssp/trunk/debian/control 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1,19 @@ +Source: dssp +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Build-Depends: debhelper (>= 7.0.50~), + libboost1.46-dev (>= 1.46.1), + libboost-filesystem1.46-dev (>= 1.46.1), + libboost-iostreams1.46-dev (>= 1.46.1), + libboost-program-options1.46-dev (>= 1.46.1), + libboost-system1.46-dev (>= 1.46.1), + libboost-thread1.46-dev (>= 1.46.1) +Standards-Version: 3.9.1 +Section: science +Homepage: http://www.cmbi.ru.nl/dssp.html + +Package: dssp +Architecture: any +Depends: ${misc:Depends}, ${shlibs:Depends} +Description: DSSP is an application you use to calculate the + secondary structure of a protein. Added: trunk/packages/dssp/trunk/debian/copyright =================================================================== --- trunk/packages/dssp/trunk/debian/copyright (rev 0) +++ trunk/packages/dssp/trunk/debian/copyright 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1,37 @@ +Format: http://dep.debian.net/deps/dep5/ +Upstream-Name: dssp +Upstream-Contact: Maarten L. Hekkelman <[email protected]> +Source: http://www.cmbi.ru.nl/dssp/ + +Files: * +Copyright: © 2009-2012, Maarten L. Hekkelman <[email protected]> +License: Boost-1.0 + +Files: debian/* +Copyright: © 2012, Maarten L. Hekkelman <[email protected]> +License: Boost-1.0 + +License: Boost-1.0 + Boost Software License - Version 1.0 - August 17th, 2003 + . + Permission is hereby granted, free of charge, to any person or organization + obtaining a copy of the software and accompanying documentation covered by + this license (the "Software") to use, reproduce, display, distribute, + execute, and transmit the Software, and to prepare derivative works of the + Software, and to permit third-parties to whom the Software is furnished to + do so, all subject to the following: + . + The copyright notices in the Software and this entire statement, including + the above license grant, this restriction and the following disclaimer, + must be included in all copies of the Software, in whole or in part, and + all derivative works of the Software, unless such copies or derivative + works are solely in the form of machine-executable object code generated by + a source language processor. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT + SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE + FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, + ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER + DEALINGS IN THE SOFTWARE. Added: trunk/packages/dssp/trunk/debian/patches/makefile =================================================================== --- trunk/packages/dssp/trunk/debian/patches/makefile (rev 0) +++ trunk/packages/dssp/trunk/debian/patches/makefile 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1,66 @@ +--- a/makefile ++++ b/makefile +@@ -11,23 +11,19 @@ + + firstTarget: mkdssp + +-include make.config +- + VERSION = 2.0.4 + +-DEST_DIR ?= /usr/local/ +-LIB_DIR = $(BOOST_LIB_DIR) +-INC_DIR = $(BOOST_INC_DIR) +-MAN_DIR = $(DEST_DIR)man/man1/ ++BIN_DIR = $(DESTDIR)/usr/bin ++MAN_DIR = $(DESTDIR)/usr/share/man/man1 + +-BOOST_LIBS = thread regex filesystem program_options date_time iostreams math_c99 system +-LIBS = $(BOOST_LIBS:%=boost_%$(BOOST_LIB_SUFFIX)) z bz2 ++BOOST_LIBS = thread filesystem program_options iostreams system ++LIBS = $(BOOST_LIBS:%=boost_%) + + DEFINES = USE_COMPRESSION LINUX VERSION='"$(VERSION)"' + CC = c++ + +-CFLAGS = $(INC_DIR:%=-I%) -iquote src -g -Wall -Wno-multichar -pthread +-LDOPTS = $(LIB_DIR:%=-L%) $(LIBS:%=-l%) -g -pthread ++CFLAGS += -iquote src -g -Wall -Wno-multichar -pthread ++LDOPTS += $(LIBS:%=-l%) -g -pthread + + OBJ_DIR = obj + +@@ -49,7 +45,8 @@ + + mkdssp: $(OBJECTS) + @ echo linking $@ +- @ $(CC) -static -o $@ $^ $(LDOPTS) ++ @ $(CC) -o $@ $^ $(LDOPTS) ++ @ strip $@ + @ echo OK + + include $(OBJECTS:%.o=%.d) +@@ -65,8 +62,9 @@ + rm -rf $(OBJ_DIR)/* mkdssp + + install: mkdssp +- sudo install -m 755 mkdssp $(DEST_DIR)bin/mkdssp +- sudo install doc/mkdssp.1 $(MAN_DIR)mkdssp.1 ++ install -d $(BIN_DIR) $(MAN_DIR) ++ install -m 755 mkdssp $(BIN_DIR)/mkdssp ++ install doc/mkdssp.1 $(MAN_DIR)/mkdssp.1 + + dist: $(OBJECTS) + @ rm -rf $(DIST_NAME) +@@ -81,11 +79,3 @@ + @ cp doc/mkdssp.1 $(DIST_NAME)/doc/mkdssp.1 + tar czf $(DIST_NAME).tgz $(DIST_NAME) + cp $(DIST_NAME).tgz dssp_$(VERSION).orig.tar.gz +- +-make.config: +- @echo "creating empty make.config file" +- @echo "# Set local options for make here" > make.config +- @echo "#BOOST_LIB_SUFFIX = -mt" >> make.config +- @echo "#BOOST_LIB_DIR = $(HOME)/projects/boost/lib" >> make.config +- @echo "#BOOST_INC_DIR = $(HOME)/projects/boost/include" >> make.config +- Added: trunk/packages/dssp/trunk/debian/patches/series =================================================================== --- trunk/packages/dssp/trunk/debian/patches/series (rev 0) +++ trunk/packages/dssp/trunk/debian/patches/series 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1 @@ +makefile Added: trunk/packages/dssp/trunk/debian/rules =================================================================== --- trunk/packages/dssp/trunk/debian/rules (rev 0) +++ trunk/packages/dssp/trunk/debian/rules 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1,4 @@ +#!/usr/bin/make -f + +%: + dh $@ Property changes on: trunk/packages/dssp/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/dssp/trunk/debian/source/format =================================================================== --- trunk/packages/dssp/trunk/debian/source/format (rev 0) +++ trunk/packages/dssp/trunk/debian/source/format 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/dssp/trunk/debian/watch =================================================================== --- trunk/packages/dssp/trunk/debian/watch (rev 0) +++ trunk/packages/dssp/trunk/debian/watch 2012-04-18 11:10:22 UTC (rev 10402) @@ -0,0 +1,2 @@ +version=2.0.4 +ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-([0-9.]+).tbz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
