Étienne Mollier pushed to branch master at Debian Med / ea-utils
Commits: a4fee74e by Étienne Mollier at 2021-10-17T21:24:34+02:00 add gcc11.patch to fix ftbfs with gcc 11 Closes: #984043 - - - - - c66b1706 by Étienne Mollier at 2021-10-17T21:41:52+02:00 ready to upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/gcc11.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +ea-utils (1.1.2+dfsg-9) unstable; urgency=medium + + * Team upload. + * Add gcc11.patch to fix ftbfs with gcc 11. (Closes: #984043) + + -- Étienne Mollier <[email protected]> Sun, 17 Oct 2021 21:37:07 +0200 + ea-utils (1.1.2+dfsg-8) unstable; urgency=medium * Team Upload. ===================================== debian/patches/gcc11.patch ===================================== @@ -0,0 +1,41 @@ +Description: fix failure to build from source with gcc 11 +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984043 +Forwarded: no +Last-Update: 2021-10-17 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- ea-utils.orig/fastq-stats.cpp ++++ ea-utils/fastq-stats.cpp +@@ -180,14 +180,14 @@ + while ( (c = getopt (argc, argv, "?DdL:g:x:b:c:w:s:h")) != -1) { + switch (c) { + case 'c': cyclemax = atoi(optarg); break; +- case 'D': ++nodup; break; +- case 'd': ++debug; break; ++ case 'D': nodup=1; break; ++ case 'd': debug=1; break; + case 'w': window = atoi(optarg); break; + case 's': show_max = atoi(optarg); break; +- case 'x': fastx_outfile = optarg; ++fastx; break; +- case 'b': brkdown_outfile = optarg; ++brkdown; break; +- case 'L': ++len_hist; lenhist_outfile = optarg; break; +- case 'g': gc_outfile = optarg; ++gc; break; ++ case 'x': fastx_outfile = optarg; fastx=1; break; ++ case 'b': brkdown_outfile = optarg; brkdown=1; break; ++ case 'L': len_hist=1; lenhist_outfile = optarg; break; ++ case 'g': gc_outfile = optarg; gc=1; break; + case 'h': usage(stdout); return 0; + case '?': + if (!optopt) { +--- ea-utils.orig/sam-stats.cpp ++++ ea-utils/sam-stats.cpp +@@ -226,7 +226,7 @@ + while ( (c = getopt_long(argc, argv, "?BzArR:Ddx:MhS:", long_options, &long_index)) != -1) { + switch (c) { + case 'd': ++debug; break; // increment debug level +- case 'D': ++trackdup; break; ++ case 'D': trackdup=1; break; + case 'B': inbam=1; break; + case 'A': max_chr=1000000; break; // max chrom + case 'R': rnafile=optarg; // pass through ===================================== debian/patches/series ===================================== @@ -3,3 +3,4 @@ hardening.patch name-space-conflict.patch cross.patch arm64.patch +gcc11.patch View it on GitLab: https://salsa.debian.org/med-team/ea-utils/-/compare/e3bf006d01905e2be8a4c2f69af7ad3f5ba37791...c66b17062823b4c4123f1ad5d4a77b259e602cc5 -- View it on GitLab: https://salsa.debian.org/med-team/ea-utils/-/compare/e3bf006d01905e2be8a4c2f69af7ad3f5ba37791...c66b17062823b4c4123f1ad5d4a77b259e602cc5 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
