Étienne Mollier pushed to branch master at Debian Med / python-biopython
Commits: 6371465c by Étienne Mollier at 2021-10-22T16:36:55+02:00 d/changelog: prepare for unstable - - - - - 934d22fc by Étienne Mollier at 2021-10-22T16:53:20+02:00 Mark spelling.patch as not needing forward It seems that the file being package might not exists in upcoming Biopython versions anymore. - - - - - ffbef548 by Étienne Mollier at 2021-10-22T18:04:56+02:00 adjust-test_GraphicsBitmaps.patch: forwarded upstream - - - - - 1b3afa09 by Étienne Mollier at 2021-10-22T18:06:59+02:00 update changelog - - - - - 93a94954 by Étienne Mollier at 2021-10-22T18:09:08+02:00 d/control: breaks ncbi-acc-download (<< 0.2.7-2~) - - - - - cc95b59c by Étienne Mollier at 2021-10-22T18:10:12+02:00 update changelog - - - - - 676bb97a by Étienne Mollier at 2021-10-22T18:39:37+02:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/adjust-test_GraphicsBitmaps.patch - debian/patches/spelling.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +python-biopython (1.79+dfsg-1) unstable; urgency=medium + + * Migrate from Experimental to Unstable. + * Mark spelling.patch as not needing forward. + It seems that the file being package might not exists in upcoming + Biopython versions anymore. + * adjust-test_GraphicsBitmaps.patch: forwarded upstream. + * d/control: breaks ncbi-acc-download (<< 0.2.7-2~) + + -- Étienne Mollier <[email protected]> Fri, 22 Oct 2021 18:10:48 +0200 + python-biopython (1.79+dfsg-1~0exp0) experimental; urgency=medium * New upstream version ===================================== debian/control ===================================== @@ -89,7 +89,8 @@ Suggests: python3-tk, t-coffee, wise, w3-dtd-mathml -Breaks: cnvkit (<< 0.9.7-1~) +Breaks: cnvkit (<< 0.9.7-1~), + ncbi-acc-download (<< 0.2.7-2~) Description: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for ===================================== debian/patches/adjust-test_GraphicsBitmaps.patch ===================================== @@ -1,17 +1,18 @@ Description: adjust test skipping logic for new error message in renderpm Author: Étienne Mollier <[email protected]> -Forwarded: no +Forwarded: https://github.com/biopython/biopython/pull/3767 Last-Update: 2021-10-16 --- This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- python-biopython.orig/Tests/test_GraphicsBitmaps.py +++ python-biopython/Tests/test_GraphicsBitmaps.py -@@ -102,7 +102,7 @@ +@@ -102,7 +102,8 @@ else: raise except RenderPMError as err: - if str(err).startswith("Can't setFont("): -+ if str(err).startswith("Can't setFont(") or str(err).startswith("Error in setFont("): ++ if (str(err).startswith("Can't setFont(") ++ or str(err).startswith("Error in setFont(")): # TODO - can we raise the error BEFORE the unit test function # is run? That way it can be skipped in run_tests.py raise MissingExternalDependencyError( ===================================== debian/patches/spelling.patch ===================================== @@ -1,6 +1,6 @@ Description: fix spelling-error-in-binary Author: Étienne Mollier <[email protected]> -Forwarded: no +Forwarded: not-needed Last-Update: 2021-10-16 --- This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/955331683926a4b741af8ff819e972de46ab042c...676bb97a40d3752fa951980145c153fb989253db -- View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/955331683926a4b741af8ff819e972de46ab042c...676bb97a40d3752fa951980145c153fb989253db You're receiving this email because of your account on salsa.debian.org.
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