Nilesh Patra pushed to branch master at Debian Med / fastqtl
Commits: eaad7168 by Nilesh Patra at 2021-10-23T18:03:42+05:30 d/rules: Force -std=c++14 - - - - - a863b8ee by Nilesh Patra at 2021-10-23T18:09:57+05:30 Bump debhelper compatibility level to 13 - - - - - 0be58692 by Nilesh Patra at 2021-10-23T18:10:00+05:30 Bump Standards-Version to 4.6.0 (no changes needed) - - - - - e22618e1 by Nilesh Patra at 2021-10-23T18:11:42+05:30 Replace deprecated ADTTMP with AUTOPKGTEST_TMP - - - - - b73ad2c4 by Nilesh Patra at 2021-10-23T18:13:18+05:30 Add "Rules-Requires-Root: no" - - - - - 80b9963c by Nilesh Patra at 2021-10-23T18:22:20+05:30 Update override - - - - - b31bcccd by Nilesh Patra at 2021-10-23T18:22:20+05:30 Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - debian/fastqtl.lintian-overrides - debian/rules - debian/tests/run-sample-analysis Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,22 @@ +fastqtl (2.184+dfsg-8) unstable; urgency=medium + + * Team Upload. + [ Steffen Moeller ] + * d/u/metadata: yamllint + + [ Dylan Aïssi ] + * Update my email + + [ Nilesh Patra ] + * d/rules: Force -std=c++14 + * Bump debhelper compatibility level to 13 + * Bump Standards-Version to 4.6.0 (no changes needed) + * Replace deprecated ADTTMP with AUTOPKGTEST_TMP + * Add "Rules-Requires-Root: no" + * Update override + + -- Nilesh Patra <[email protected]> Sat, 23 Oct 2021 18:14:58 +0530 + fastqtl (2.184+dfsg-7) unstable; urgency=medium * Team upload ===================================== debian/control ===================================== @@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Dylan Aïssi <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, @@ -13,10 +13,11 @@ Build-Depends: debhelper-compat (= 12), libblas-dev, libeigen3-dev, libhts-dev -Standards-Version: 4.4.0 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git Homepage: http://fastqtl.sourceforge.net/ +Rules-Requires-Root: no Package: fastqtl Architecture: any ===================================== debian/fastqtl.lintian-overrides ===================================== @@ -1,3 +1,3 @@ # False positive: "Buil" is the name of a developer of FastQTL. fastqtl: spelling-error-in-copyright Buil Build -fastqtl: spelling-error-in-manpage usr/share/man/man1/fastQTL.1.gz Buil Build +typo-in-manual-page usr/share/man/man1/fastQTL.1.gz line 140 Buil Build ===================================== debian/rules ===================================== @@ -4,6 +4,7 @@ CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS 2>/dev/null | sed -e 's/-O2//g') export DEB_BUILD_MAINT_OPTIONS = hardening=+all +export DEB_CXXFLAGS_MAINT_APPEND = -std=c++14 %: dh $@ ===================================== debian/tests/run-sample-analysis ===================================== @@ -5,13 +5,13 @@ # Last-Update: 2016-04-02 pkg=fastqtl -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi -cd $ADTTMP -cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP +cd $AUTOPKGTEST_TMP +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP -tar Jxvf $ADTTMP/examples.tar.xz +tar Jxvf $AUTOPKGTEST_TMP/examples.tar.xz fastQTL \ --vcf genotypes.vcf.gz \ @@ -26,5 +26,5 @@ fastQTL \ diff fastqtl_expected_output.txt fastqtl_output.txt -rm -f $ADTTMP/* +rm -f $AUTOPKGTEST_TMP/* View it on GitLab: https://salsa.debian.org/med-team/fastqtl/-/compare/27ace0434ae3c641bfc0debdb110d799d5275272...b31bcccdffe5c7dbf9fccabfb4583b0b83ac91b8 -- View it on GitLab: https://salsa.debian.org/med-team/fastqtl/-/compare/27ace0434ae3c641bfc0debdb110d799d5275272...b31bcccdffe5c7dbf9fccabfb4583b0b83ac91b8 You're receiving this email because of your account on salsa.debian.org.
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