Nilesh Patra pushed to branch master at Debian Med / canu
Commits: 7b542b7f by Nilesh Patra at 2021-10-29T01:56:44+05:30 Add patch to fix FTBFS with new glibc (Closes: #997215) - - - - - 7b465482 by Nilesh Patra at 2021-10-29T01:57:30+05:30 Run cme - - - - - cb18223c by Nilesh Patra at 2021-10-29T02:05:11+05:30 Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/control - debian/install - debian/patches/canu_version.patch - + debian/patches/remove-deprecated-sysctl.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +canu (2.0+dfsg-2) unstable; urgency=medium + + * Team Upload. + * Add patch to fix FTBFS with new glibc (Closes: #997215) + * Run cme + + -- Nilesh Patra <[email protected]> Fri, 29 Oct 2021 01:57:43 +0530 + canu (2.0+dfsg-1) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -2,13 +2,13 @@ Source: canu Maintainer: Debian Med Packaging Team <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), libboost-dev, libmeryl-dev, # For File::Path libfilesys-df-perl, - mhap (>= 2.1.3) -Standards-Version: 4.5.0 + mhap +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/canu Vcs-Git: https://salsa.debian.org/med-team/canu.git Homepage: http://canu.readthedocs.org/en/latest/ @@ -19,7 +19,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, libfilesys-df-perl, - mhap (>= 2.1.3), + mhap, gnuplot Suggests: pbgenomicconsensus, nanopolish ===================================== debian/install ===================================== @@ -1,3 +1,3 @@ *-*/bin usr/lib/canu/ *-*/lib usr/lib/canu/ -debian/bin/canu /usr/bin/ +debian/bin/canu usr/bin/ ===================================== debian/patches/canu_version.patch ===================================== @@ -1,3 +1,4 @@ +Description: Canu_version Index: canu/src/canu_version_update.pl =================================================================== --- canu.orig/src/canu_version_update.pl ===================================== debian/patches/remove-deprecated-sysctl.patch ===================================== @@ -0,0 +1,18 @@ +Description: sysctl.h has been removed with latest glibc, do not include it +Bug-Debian: https://bugs.debian.org/997215 +Author: Nilesh Patra <[email protected]> +Last-Update: 2021-10-29 +--- a/src/utility/system.C ++++ b/src/utility/system.C +@@ -42,11 +42,6 @@ + #include "jemalloc/jemalloc.h" + #endif + +-#if !defined(__CYGWIN__) && !defined(_WIN32) +-#include <sys/sysctl.h> +-#endif +- +- + + double + getTime(void) { ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ use-debian-mhap-at-runtime.patch external-mhap.patch canu_version.patch +remove-deprecated-sysctl.patch View it on GitLab: https://salsa.debian.org/med-team/canu/-/compare/5d1934b4bf09daddd794f2c466d8a86631a92801...cb18223c245fc94bfa933e8fe09a85d98b991219 -- View it on GitLab: https://salsa.debian.org/med-team/canu/-/compare/5d1934b4bf09daddd794f2c466d8a86631a92801...cb18223c245fc94bfa933e8fe09a85d98b991219 You're receiving this email because of your account on salsa.debian.org.
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