Graham Inggs pushed to branch master at Debian Med / uc-echo
Commits: 508261d3 by Graham Inggs at 2021-11-07T13:19:46+02:00 Do not build 32-bit binaries for the wrong architecture - - - - - 83acbd12 by Graham Inggs at 2021-11-07T13:19:51+02:00 Build-Depend on python3 instead of python3-all-dev - - - - - 304eafb5 by Graham Inggs at 2021-11-07T13:19:51+02:00 Switch to debhelper 13 - - - - - 9427024b by Graham Inggs at 2021-11-07T13:19:51+02:00 Test the installed binaries - - - - - c69179a3 by Graham Inggs at 2021-11-07T13:19:51+02:00 Bump Standards-Version to 4.6.0 - - - - - e79f0dc8 by Graham Inggs at 2021-11-07T13:21:09+02:00 Prepare for upload to unstable - - - - - 6 changed files: - − debian/README.Debian - debian/changelog - debian/control - debian/rules - debian/tests/control - debian/tests/runtest Changes: ===================================== debian/README.Debian deleted ===================================== @@ -1,7 +0,0 @@ -According to upstream this program needs lots of RAM and thus for i386/amd64 -the compiler flag -m64 is needed. -Unfortunately this is not supported on all architectures. So on some (like -mips, mipsel, kfreebsd-i386, hurd-i386, armel, armhf), that have no 64-bit -mode implemented, only a 32bit version is built. -Apart from the number of data that can be processed, this has no influence -on the results. ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +uc-echo (1.12-16) unstable; urgency=medium + + * Team upload + * Do not build 32-bit binaries for the wrong architecture + * Build-Depend on python3 instead of python3-all-dev + * Switch to debhelper 13 + * Test the installed binaries + * Bump Standards-Version to 4.6.0, no changes + + -- Graham Inggs <[email protected]> Sun, 07 Nov 2021 11:20:37 +0000 + uc-echo (1.12-15) unstable; urgency=medium * Using int and not char for storing offsets ===================================== debian/control ===================================== @@ -6,13 +6,12 @@ Uploaders: Thorsten Alteholz <[email protected]>, Pierre Gruet <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), dh-python, - python3-all-dev:any, + python3:any, python3-scipy:native, python3-numpy:native, - g++-multilib [i386 powerpc sparc x32] -Standards-Version: 4.5.0 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/uc-echo Vcs-Git: https://salsa.debian.org/med-team/uc-echo.git Homepage: http://uc-echo.sourceforge.net/ ===================================== debian/rules ===================================== @@ -6,10 +6,6 @@ include /usr/share/dpkg/architecture.mk LIBRARY_PATH=/usr/lib/$(DEB_HOST_MULTIARCH) CPATH=/usr/include/$(DEB_HOST_MULTIARCH) export LIBRARY_PATH CPATH -ADDCXXFLAGS = -m64 -ifeq ($(DEB_HOST_ARCH),$(filter $(DEB_HOST_ARCH),mips mipsel mipsn32 mipsn32el mips64 mips64el hppa kfreebsd-i386 hurd-i386 armel armhf arm64 ia64 sh4 powerpcspe m68k)) -ADDCXXFLAGS = -endif CXXFLAGS += $(ADDCXXFLAGS) ===================================== debian/tests/control ===================================== @@ -1,2 +1,2 @@ Tests: runtest -Depends: @, build-essential +Depends: @ ===================================== debian/tests/runtest ===================================== @@ -1,15 +1,11 @@ #!/bin/bash set -e -echo 'make to get required binaries' -make - echo 'Test for sample data' -python3 ./ErrorCorrection.py -o output/sample_data.fastq sample_data.txt +uc-echo -o output/sample_data.fastq sample_data.txt echo 'Run with 4 threads' -python3 ./ErrorCorrection.py --ncpu 4 -o output/sample_data.fastq sample_data.txt +uc-echo --ncpu 4 -o output/sample_data.fastq sample_data.txt echo 'cleaning up ...' -make clean -rm -rf tmp/ log/ output/ +rm -rf tmp/ log/ output/ View it on GitLab: https://salsa.debian.org/med-team/uc-echo/-/compare/f5b2c0f54177e2d60d74fbfb623fbc27ff8002a3...e79f0dc8217c09b85af011099832f777b17e59b5 -- View it on GitLab: https://salsa.debian.org/med-team/uc-echo/-/compare/f5b2c0f54177e2d60d74fbfb623fbc27ff8002a3...e79f0dc8217c09b85af011099832f777b17e59b5 You're receiving this email because of your account on salsa.debian.org.
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