Diane Trout pushed to branch master at Debian Med / python-scanpy
Commits: 388748f0 by Diane Trout at 2021-11-09T16:37:52-08:00 New upstream version 1.8.2 - - - - - 1a516aad by Diane Trout at 2021-11-09T16:38:25-08:00 Update upstream source from tag 'upstream/1.8.2' Update to upstream version '1.8.2' with Debian dir 36c8303a60ae8d7883ad671a386b86eeae3febec - - - - - d07f939e by Diane Trout at 2021-11-10T14:45:52-08:00 Upstream dropped this dependency - - - - - c793a1c0 by Diane Trout at 2021-11-10T14:46:13-08:00 Some test cases try to use the leiden and louvain clustering algoritms Unfortunately I think scanpy really wants the vtaag louvain which I think the developer removed in preference of their leiden method - - - - - c235d9d4 by Diane Trout at 2021-11-10T14:49:51-08:00 test_plot_rank_genes_groups_gene_symbols worked without internet - - - - - 5e770b0f by Diane Trout at 2021-11-10T14:50:30-08:00 compute methods were installed correctly into test environment Also pybuild.testfiles doesn't seem to copy into subdirectories - - - - - bdb858c3 by Diane Trout at 2021-11-10T14:51:22-08:00 Install conftest.py into pybuild test environment - - - - - 988cea44 by Diane Trout at 2021-11-10T14:53:26-08:00 Include more test data This allows more tests to run without needing internet access. - - - - - 22bba973 by Diane Trout at 2021-11-10T14:56:19-08:00 Update tests that depnded on louvain package - - - - - 6e83b16f by Diane Trout at 2021-11-10T14:56:40-08:00 Disable some more tests that ran me out of memory - - - - - e0e87f20 by Diane Trout at 2021-11-10T14:57:00-08:00 Disable test_visium_default after asking upstream about it. https://github.com/theislab/scanpy/issues/2048 - - - - - 9179e3fc by Diane Trout at 2021-11-10T15:07:39-08:00 Provide image comparison test cases better test data There's some modest differences in plot layouts between upstreams test enviornments and ours that cause slightly different layouts. - - - - - 30 changed files: - .pre-commit-config.yaml - + debian/README.Debian - + debian/_images/correlation.png - + debian/_images/master_dotplot3.png - + debian/_images/master_matrixplot_std_scale_var_dict.png - + debian/_images/master_paga.png - + debian/_images/master_paga_continuous.png - + debian/_images/master_paga_continuous_multiple.png - + debian/_images/master_paga_continuous_obs.png - + debian/_images/master_paga_pie.png - + debian/_images/master_spatial_external_img.png - + debian/_images/master_spatial_general_cat.png - + debian/_images/master_spatial_visium_empty_image.png - + debian/_images/master_umap_with_edges.png - debian/control - debian/data/get - + debian/data/paul15/paul15.h5 - + debian/data/pbmc3k_processed.h5ad - debian/patches/mark-tests-need-internet.patch - debian/pybuild.testfiles - debian/rules - debian/source/include-binaries - docs/ecosystem.rst - + docs/release-notes/1.8.1.rst - + docs/release-notes/1.8.2.rst - docs/release-notes/release-latest.rst - pyproject.toml - scanpy/external/exporting.py - scanpy/plotting/_anndata.py - scanpy/plotting/_tools/__init__.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-scanpy/-/compare/94eaf9310490ffab17a2cc33667bbcffaebfffd7...9179e3fc88d0ab55912a2b4e6dd9e7dc1d484d83 -- View it on GitLab: https://salsa.debian.org/med-team/python-scanpy/-/compare/94eaf9310490ffab17a2cc33667bbcffaebfffd7...9179e3fc88d0ab55912a2b4e6dd9e7dc1d484d83 You're receiving this email because of your account on salsa.debian.org.
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