Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ed09e7fe by Andreas Tille at 2021-11-18T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,52 +1,53 @@
-Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
+Last-Update: Thu, 18 Nov 2021 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 192 | {imaging,covid-19}
|
orthanc | 104 | {covid-19,practice,imaging}
|
orthanc-wsi | 60 |
{his,oncology,covid-19,laboratory,imaging,practice} |
- htsjdk | 34 | {bio-dev}
|
+ htsjdk | 35 | {bio-dev}
|
nipype | 32 | {imaging-dev,imaging}
|
- amide | 27 | {imaging}
|
+ amide | 29 | {imaging}
|
+ mrtrix3 | 28 | {imaging}
|
+ dicom3tools | 27 | {imaging}
|
gdcm | 27 | {imaging-dev}
|
- mrtrix3 | 27 | {imaging}
|
- dicom3tools | 26 | {imaging}
|
- dicomscope | 22 | {imaging}
|
- openslide | 20 | {imaging}
|
- dcm2niix | 18 | {imaging}
|
+ dicomscope | 23 | {imaging}
|
+ openslide | 21 | {imaging}
|
+ dcm2niix | 19 | {imaging}
|
ngs-sdk | 18 | {bio-dev}
|
gnumed-server | 17 | {practice,covid-19}
|
- invesalius | 15 | {imaging}
|
- odin | 15 | {imaging,imaging-dev}
|
+ odin | 17 | {imaging,imaging-dev}
|
+ invesalius | 16 | {imaging}
|
+ gdcm | 14 | {covid-19,imaging}
|
gdcm | 14 | {imaging-dev}
|
insighttoolkit4 | 14 | {imaging-dev}
|
+ minc-tools | 14 | {imaging}
|
orthanc-webviewer | 14 | {imaging}
|
- gdcm | 13 | {covid-19,imaging}
|
- minc-tools | 13 | {imaging}
|
- dicomnifti | 12 | {imaging}
|
+ dicomnifti | 13 | {imaging}
|
+ nifticlib | 12 | {imaging}
|
nifti2dicom | 11 | {imaging}
|
- nifticlib | 11 | {imaging}
|
adun.app | 9 | {bio}
|
libminc | 9 | {imaging-dev}
|
ngs-sdk | 9 | {bio-dev}
|
+ pixelmed | 9 | {imaging}
|
salmon | 9 | {covid-19,bio}
|
ngs-sdk | 8 | {bio-dev}
|
nifti2dicom | 8 | {imaging}
|
nifticlib | 8 | {imaging-dev}
|
- pixelmed | 8 | {imaging}
|
+ king | 7 | {imaging,typesetting}
|
lagan | 7 | {bio}
|
+ mia | 7 | {imaging}
|
orthanc-dicomweb | 7 | {covid-19,imaging}
|
oscar | 7 | {data,tools,practice}
|
- mia | 6 | {imaging}
|
- plastimatch | 6 | {imaging}
|
+ plastimatch | 7 | {imaging}
|
biojava-live | 5 | {bio-dev}
|
getdata | 5 | {bio}
|
jebl2 | 5 | {bio-dev}
|
- king | 5 | {imaging,typesetting}
|
libncl | 5 | {bio}
|
openslide | 5 | {imaging-dev}
|
orthanc-mysql | 5 | {imaging}
|
orthanc-postgresql | 5 | {imaging}
|
+ rambo-k | 5 | {bio}
|
treeview | 5 | {bio-phylogeny,bio}
|
bart-view | 4 | {imaging}
|
gifticlib | 4 | {imaging-dev}
|
@@ -56,14 +57,12 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
orthanc-gdcm | 4 | {imaging}
|
papyrus | 4 | {imaging-dev}
|
pymia | 4 | {imaging-dev}
|
- rambo-k | 4 | {bio}
|
runcircos-gui | 4 | {bio}
|
srf | 4 | {bio-dev}
|
stacks | 4 | {bio}
|
beast-mcmc | 3 | {bio,bio-phylogeny}
|
brig | 3 | {bio}
|
canu | 3 | {bio}
|
- cat-bat | 3 | {covid-19,bio}
|
clonalorigin | 3 | {bio}
|
cmtk | 3 | {imaging}
|
elastix | 3 | {imaging}
|
@@ -79,12 +78,12 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
phyutility | 3 | {bio,cloud}
|
piler | 3 | {bio}
|
plasmidseeker | 3 | {bio}
|
- rtax | 3 | {bio,cloud}
|
saint | 3 | {bio}
|
anfo | 2 | {bio,cloud}
|
arden | 2 | {cloud,bio}
|
assemblytics | 2 | {bio}
|
bitseq | 2 | {bio}
|
+ cat-bat | 2 | {covid-19,bio}
|
clonalframeml | 2 | {bio,covid-19}
|
delly | 2 | {covid-19,bio}
|
embassy-domsearch | 2 | {bio,cloud}
|
@@ -99,12 +98,13 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
metaphlan2 | 2 | {bio}
|
mhap | 2 | {bio,bio-ngs}
|
microbegps | 2 | {bio}
|
- ncbi-vdb | 2 | {bio-dev}
|
opencfu | 2 | {laboratory}
|
phast | 2 | {bio}
|
placnet | 2 | {bio}
|
+ plasmidid | 2 | {covid-19,bio}
|
proalign | 2 | {bio,bio-phylogeny}
|
rdp-classifier | 2 | {bio}
|
+ rtax | 2 | {bio,cloud}
|
sibsim4 | 2 | {cloud,bio}
|
spread-phy | 2 | {bio,bio-phylogeny}
|
tracetuner | 2 | {bio}
|
@@ -144,11 +144,11 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
libseqlib | 1 | {bio-dev}
|
libstatgen | 1 | {bio-dev}
|
libvistaio | 1 | {imaging-dev}
|
+ ncbi-vdb | 1 | {bio-dev}
|
parallel-fastq-dump | 1 | {covid-19}
|
pbseqlib | 1 | {bio-dev}
|
pigx-rnaseq | 1 | {covid-19,bio}
|
pique | 1 | {bio}
|
- plasmidid | 1 | {covid-19,bio}
|
pplacer | 1 | {covid-19,bio-phylogeny,bio}
|
pscan-chip | 1 | {bio}
|
qcumber | 1 | {bio}
|
@@ -196,8 +196,8 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
orthanc-imagej | 0 | {imaging}
|
pbcopper | 0 | {bio-dev}
|
pbseqlib | 0 | {bio-dev}
|
- python-seqcluster | 0 | {bio-dev,covid-19}
|
python-seqcluster | 0 | {bio}
|
+ python-seqcluster | 0 | {bio-dev,covid-19}
|
python-wdlparse | 0 | {bio-dev}
|
resfinder-db | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
@@ -210,5 +210,6 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
vienna-rna | 0 | {bio,covid-19}
|
xdffileio | 0 | {imaging-dev}
|
mssstest | -1 | {tools}
|
-(240 rows)
+ tipp | -1 | {bio,covid-19}
|
+(241 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed09e7fe38d8134b6745023a09d79ea84f2c77ed
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed09e7fe38d8134b6745023a09d79ea84f2c77ed
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