Étienne Mollier pushed to branch master at Debian Med / libstatgen
Commits: 8ea0ee9a by Étienne Mollier at 2021-12-02T22:18:45+01:00 SONAME bump from libstatgen0 to libstatgen1 Closes: #996409 - - - - - d3e4e716 by Étienne Mollier at 2021-12-02T22:46:38+01:00 d/copyright: update years - - - - - ff4f9f64 by Étienne Mollier at 2021-12-02T22:56:14+01:00 Add spelling.patch: fix typos caught by lintian - - - - - ec0c6b9a by Étienne Mollier at 2021-12-02T23:05:28+01:00 ready to upload to experimental - - - - - 7 changed files: - debian/changelog - debian/control - debian/copyright - debian/libstatgen0.symbols → debian/libstatgen1.symbols - debian/patches/series - + debian/patches/spelling.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +libstatgen (1.0.15-3~0exp0) experimental; urgency=medium + + * Team upload. + * SONAME bump from libstatgen0 to libstatgen1 (Closes: #996409) + * d/copyright: update years + * Add spelling.patch: fix typos caught by lintian + + -- Étienne Mollier <[email protected]> Thu, 02 Dec 2021 23:04:37 +0100 + libstatgen (1.0.15-2) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -14,7 +14,7 @@ Vcs-Git: https://salsa.debian.org/med-team/libstatgen.git Homepage: https://genome.sph.umich.edu/wiki/C++_Library:_libStatGen Rules-Requires-Root: no -Package: libstatgen0 +Package: libstatgen1 Architecture: any-amd64 Multi-Arch: same Section: libs @@ -36,7 +36,7 @@ Package: libstatgen-dev Architecture: any-amd64 Multi-Arch: same Section: libdevel -Depends: libstatgen0 (= ${binary:Version}), +Depends: libstatgen1 (= ${binary:Version}), ${misc:Depends} Suggests: libstatgen-doc Description: development files for the libStatGen ===================================== debian/copyright ===================================== @@ -12,7 +12,7 @@ Files: bam/* general/* glf/* vcf/* -Copyright: 2010-2013 Regents of the University of Michigan, Hyun Min Kang, Matthew Flickenger, Matthew Snyder and Goncalo Abecasis +Copyright: 2010-2015 Regents of the University of Michigan, Hyun Min Kang, Matthew Flickenger, Matthew Snyder and Goncalo Abecasis License: GPL-3+ Files: general/Random.cpp @@ -44,7 +44,7 @@ License: Expat Comment: Based on samtools version 981 (retrieved 7/26/11). Files: debian/* -Copyright: 2018 Dylan Aïssi <[email protected]> +Copyright: 2018-2021 Dylan Aïssi <[email protected]> License: GPL-3+ License: GPL-3+ ===================================== debian/libstatgen0.symbols → debian/libstatgen1.symbols ===================================== @@ -1,5 +1,5 @@ -libStatGen.so.0 libstatgen0 #MINVER# -* Build-Depends-Package: libstatgen0 +libStatGen.so.1 libstatgen1 #MINVER# +* Build-Depends-Package: libstatgen1 InputPromptWidth@Base 1.0.14 (c++)"MemoryInfo(double)@Base" 1.0.14 (c++)"QuickSort2(void*, void*, unsigned long, unsigned long, int (*)(void const*, void const*))@Base" 1.0.14 ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ Fix_compilation_flags.patch +spelling.patch ===================================== debian/patches/spelling.patch ===================================== @@ -0,0 +1,28 @@ +Description: fix typos caught by lintian +Author: Étienne Mollier <[email protected]> +Forwarded: no +Last-Update: 2021-12-02 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- libstatgen.orig/general/PedigreeDescription.cpp ++++ libstatgen/general/PedigreeDescription.cpp +@@ -242,7 +242,7 @@ + printf("Map file column labels\n" + " -- COLUMN 1, Expecting MARKER_ID, Read %s\n" + " -- COLUMN 2, Expecting MARKER_NAME, Read %s\n" +- " -- COLUMN 3, Expection BASE_PAIR_POSITION, Read %s\n\n", ++ " -- COLUMN 3, Expecting BASE_PAIR_POSITION, Read %s\n\n", + (const char *)(tokens[0]), (const char *)(tokens[1]), + (const char *)(tokens[2])); + +--- libstatgen.orig/general/PedigreeLoader.cpp ++++ libstatgen/general/PedigreeLoader.cpp +@@ -146,7 +146,7 @@ + default : + new_status = atoi(affection); + if (new_status < 0 || new_status > 2) +- error("Incorrect formating for affection status " ++ error("Incorrect formatting for affection status " + "Col %d, Affection %s\n" + "Family: %s Individual: %s Status: %s", + col, (const char *) affectionNames[a], ===================================== debian/rules ===================================== @@ -5,7 +5,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all # Define SONAME for shared library LIBNAME=libStatGen -SONUMBER=0 +SONUMBER=1 LIBSHARED=${LIBNAME}.so.${SONUMBER} %: View it on GitLab: https://salsa.debian.org/med-team/libstatgen/-/compare/362e0a5866e6311cd32c4975dbe671e4e0746b61...ec0c6b9a1fda50c55c5108e8ae7add250831fd04 -- View it on GitLab: https://salsa.debian.org/med-team/libstatgen/-/compare/362e0a5866e6311cd32c4975dbe671e4e0746b61...ec0c6b9a1fda50c55c5108e8ae7add250831fd04 You're receiving this email because of your account on salsa.debian.org.
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