Nilesh Patra pushed to branch master at Debian Med / smalt
Commits: 88a3ba6a by Nilesh Patra at 2021-12-16T20:09:47+05:30 d/control: Annotate python3 with <!nocheck> - - - - - 0e8d5c5e by Nilesh Patra at 2021-12-16T20:10:43+05:30 d/p/add-runstatedir.patch: Add --runstatedir to configure script - - - - - 0f0f8d83 by Nilesh Patra at 2021-12-16T20:11:04+05:30 d/rules: Use dh_auto_configure instead of home-grown command - - - - - a41b94e9 by Nilesh Patra at 2021-12-16T20:13:17+05:30 Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/add-runstatedir.patch - debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +smalt (0.7.6-12) unstable; urgency=medium + + * Team Upload. + * Make build cross buildable + - d/control: Annotate python3 with <!nocheck> + - d/p/add-runstatedir.patch: Add --runstatedir to configure script + - d/rules: Use dh_auto_configure instead of home-grown command + + -- Nilesh Patra <[email protected]> Thu, 16 Dec 2021 20:11:13 +0530 + smalt (0.7.6-11) unstable; urgency=medium * Create target sequenceReverseComplement_test in dh_auto_build override ===================================== debian/control ===================================== @@ -5,7 +5,7 @@ Section: science Priority: optional Build-Depends: debhelper-compat (= 13), zlib1g-dev, - python3, + python3 <!nocheck>, samtools, libbambamc-dev Standards-Version: 4.6.0 ===================================== debian/patches/add-runstatedir.patch ===================================== @@ -0,0 +1,54 @@ +Description: Add --runstatedir option to configure so as to run with dh_auto_configure +Author: Nilesh Patra <[email protected]> +Last-Update: 2021-12-16 +--- a/configure ++++ b/configure +@@ -722,6 +722,7 @@ + oldincludedir + includedir + localstatedir ++runstatedir + sharedstatedir + sysconfdir + datadir +@@ -800,6 +801,7 @@ + sysconfdir='${prefix}/etc' + sharedstatedir='${prefix}/com' + localstatedir='${prefix}/var' ++runstatedir='${localstatedir}/run' + includedir='${prefix}/include' + oldincludedir='/usr/include' + docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' +@@ -976,6 +978,15 @@ + | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*) + localstatedir=$ac_optarg ;; + ++ -runstatedir | --runstatedir | --runstatedi | --runstated \ ++ | --runstate | --runstat | --runsta | --runst \ ++ | --runs | --run | --ru) ++ ac_prev=runstatedir ;; ++ -runstatedir=* | --runstatedir=* | --runstatedi=* | --runstated=* \ ++ | --runstate=* | --runstat=* | --runsta=* | --runst=* \ ++ | --runs=* | --run=* | --ru=*) ++ runstatedir=$ac_optarg ;; ++ + -mandir | --mandir | --mandi | --mand | --man | --ma | --m) + ac_prev=mandir ;; + -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*) +@@ -1187,7 +1198,7 @@ + + # Check all directory arguments for consistency. + for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \ +- datadir sysconfdir sharedstatedir localstatedir includedir \ ++ datadir sysconfdir sharedstatedir localstatedir runstatedir includedir \ + oldincludedir docdir infodir htmldir dvidir pdfdir psdir \ + libdir localedir mandir + do +@@ -1344,6 +1355,7 @@ + --sysconfdir=DIR read-only single-machine data [PREFIX/etc] + --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com] + --localstatedir=DIR modifiable single-machine data [PREFIX/var] ++ --runstatedir=DIR extra definition of runtime data [LOCALSTATEDIR/run] + --libdir=DIR object code libraries [EPREFIX/lib] + --includedir=DIR C header files [PREFIX/include] + --oldincludedir=DIR C header files for non-gcc [/usr/include] ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ #bam_cigar_test_makefile.patch #try_to_fix_automake.patch 2to3.patch +add-runstatedir.patch ===================================== debian/rules ===================================== @@ -11,8 +11,7 @@ override_dh_autoreconf: echo "Do nothing - fails because auf broken upstream autoconf stuff" override_dh_auto_configure: - # see upstream INSTALL file - CONFIG_SHELL=/bin/bash /bin/bash ./configure CONFIG_SHELL=/bin/bash + dh_auto_configure -- CONFIG_SHELL=/bin/bash override_dh_auto_install: # upstream install does install more files than needed View it on GitLab: https://salsa.debian.org/med-team/smalt/-/compare/0c378210b5ddf31c2b34d102060fb4782cfd839a...a41b94e90586efc5ba4deeb87f446d707e6b293d -- View it on GitLab: https://salsa.debian.org/med-team/smalt/-/compare/0c378210b5ddf31c2b34d102060fb4782cfd839a...a41b94e90586efc5ba4deeb87f446d707e6b293d You're receiving this email because of your account on salsa.debian.org.
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