Andreas Tille pushed to branch master at Debian Med / unanimity
Commits: 06ac7b67 by Andreas Tille at 2021-12-28T15:14:31+01:00 Fix changelog syntay - - - - - 1 changed file: - debian/changelog Changes: ===================================== debian/changelog ===================================== @@ -1,9 +1,9 @@ -Asked for removal in https://bugs.debian.org/979253 +unanimity (3.4.1+git20180307.02aa264+dfsg-1) UNRELEASED; urgency=medium -Successor available as -https://github.com/PacificBiosciences/ccs/releases/tag/v6.0.0 + Asked for removal in https://bugs.debian.org/979253 -unanimity (3.4.1+git20180307.02aa264+dfsg-1) UNRELEASED; urgency=medium + Successor available as + https://github.com/PacificBiosciences/ccs/releases/tag/v6.0.0 * Afif removed himself from Uploaders (thanks for your previous work, Afif) * New upstream version @@ -19,37 +19,37 @@ unanimity (3.4.1+git20180307.02aa264+dfsg-1) UNRELEASED; urgency=medium TODO: 1. With latest libpbcopper: -[ 56%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -cd /build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/src && /usr/bin/c++ -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/generated -I/ build/unanimity-3.4.1+git20180307.02aa264+dfsg/src -g -O2 -fdebug-prefix-map=/build/unanimity-3.4.1+git20180307.02aa264+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time - D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -c / build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp -In file included from /usr/include/pbcopper/data/ReadId.h:13, + [ 56%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o + cd /build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/src && /usr/bin/c++ -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/generated -I/ build/unanimity-3.4.1+git20180307.02aa264+dfsg/src -g -O2 -fdebug-prefix-map=/build/unanimity-3.4.1+git20180307.02aa264+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time - D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -c / build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp + In file included from /usr/include/pbcopper/data/ReadId.h:13, from /usr/include/pbcopper/data/Read.h:19, from /usr/include/pbcopper/data/MappedRead.h:10, from /usr/include/pbbam/BamRecord.h:19, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/IPoaModel.h:8, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/arrow/ArrowModel.h:5, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp:8: -/usr/include/pbcopper/data/Interval.h:24:7: error: redefinition of ‘class PacBio::Data::Interval’ + /usr/include/pbcopper/data/Interval.h:24:7: error: redefinition of ‘class PacBio::Data::Interval’ 24 | class Interval | ^~~~~~~~ -In file included from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:10, + In file included from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:10, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/Consensus.h:10, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/WindowResult.h:7, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/IConsensusModel.h:5, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/ConsensusModelFactory.h:9, from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp:3: -/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/data/Interval.h:20:7: note: previous definition of ‘class PacBio::Data::Interval’ + /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/data/Interval.h:20:7: note: previous definition of ‘class PacBio::Data::Interval’ 20 | class Interval | ^~~~~~~~ -make[3]: *** [src/CMakeFiles/unanimity.dir/build.make:79: src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o] Error 1 + make[3]: *** [src/CMakeFiles/unanimity.dir/build.make:79: src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o] Error 1 --> The definition in /include/pacbio/data/Interval.h is NOT good - we need the one of include/pacbio/data/Interval.h ! 2. If 1. is solved -[ 90%] Building CXX object src/CMakeFiles/ccs.dir/main/ccs.cpp.o -cd /build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/src && /usr/bin/c++ -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/generated -I/ build/unanimity-3.4.1+git20180307.02aa264+dfsg/src -g -O2 -fdebug-prefix-map=/build/unanimity-3.4.1+git20180307.02aa264+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time - D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/ccs.dir/main/ccs.cpp.o -c /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp -/build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp: In function ‘int Runner(const PacBio::CLI::Results&)’: -/build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp:571:38: error: ‘move’ was not declared in this scope - 571 | read.Sequence(), move(ipd), move(pw), read.LocalContextFlags(), + [ 90%] Building CXX object src/CMakeFiles/ccs.dir/main/ccs.cpp.o + cd /build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/src && /usr/bin/c++ -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/generated -I/ build/unanimity-3.4.1+git20180307.02aa264+dfsg/src -g -O2 -fdebug-prefix-map=/build/unanimity-3.4.1+git20180307.02aa264+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time - D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/ccs.dir/main/ccs.cpp.o -c /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp + /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp: In function ‘int Runner(const PacBio::CLI::Results&)’: + /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp:571:38: error: ‘move’ was not declared in this scope + 571 | read.Sequence(), move(ipd), move(pw), read.LocalContextFlags(), | ^~~~ View it on GitLab: https://salsa.debian.org/med-team/unanimity/-/commit/06ac7b67ff9033339e76e8a39fc750e95d0fcd09 -- View it on GitLab: https://salsa.debian.org/med-team/unanimity/-/commit/06ac7b67ff9033339e76e8a39fc750e95d0fcd09 You're receiving this email because of your account on salsa.debian.org.
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