Andreas Tille pushed to branch master at Debian Med / drop-seq
Commits: 52492edb by Andreas Tille at 2022-01-16T16:24:49+01:00 routine-update: New upstream version - - - - - 06561ca1 by Andreas Tille at 2022-01-16T16:25:01+01:00 New upstream version 2.5.1+dfsg - - - - - 2d6ab431 by Andreas Tille at 2022-01-16T16:27:58+01:00 Update upstream source from tag 'upstream/2.5.1+dfsg' Update to upstream version '2.5.1+dfsg' with Debian dir 33709cc1f24224ccfaad2821c7da8ab49983d97b - - - - - fafa4f58 by Andreas Tille at 2022-01-16T16:29:26+01:00 Add missing build dependency on dh addon. Changes-By: lintian-brush Fixes: lintian: missing-build-dependency-for-dh_-command See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html - - - - - fe0d9771 by Andreas Tille at 2022-01-16T16:45:31+01:00 Upstream has applied biojava4 patch - - - - - 6516ceee by Andreas Tille at 2022-01-16T16:52:21+01:00 Upload to unstable - - - - - 30 changed files: - build.xml - debian/changelog - debian/control - − debian/patches/biojava4_packages.patch - debian/patches/series - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtils.java - src/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlat.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFParser.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFRecord.java - src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java - src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java - src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequency.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReader.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyWriter.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/BestSampleAssignmentForCell.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellAssignmentUtils.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellContaminationParser.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollection.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoublets.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/IntervalAndFrequencyResult.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignments.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCell.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilities.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/36456acfdf120d9ba5f1fec7e61ef1407ff543ff...6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/36456acfdf120d9ba5f1fec7e61ef1407ff543ff...6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7 You're receiving this email because of your account on salsa.debian.org.
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