Andreas Tille pushed to branch master at Debian Med / metastudent
Commits: 80847ed0 by Andreas Tille at 2022-01-20T10:19:57+01:00 Upstream download vanished - - - - - e5e423ec by Andreas Tille at 2022-01-20T10:55:18+01:00 routine-update: Standards-Version: 4.6.0 - - - - - 552c75f7 by Andreas Tille at 2022-01-20T10:55:18+01:00 routine-update: debhelper-compat 13 - - - - - 4f3172ef by Andreas Tille at 2022-01-20T10:55:24+01:00 routine-update: Add salsa-ci file - - - - - 28e55cd3 by Andreas Tille at 2022-01-20T10:55:24+01:00 routine-update: Rules-Requires-Root: no - - - - - bffe5775 by Andreas Tille at 2022-01-20T10:55:27+01:00 Add missing build dependency on dh addon. Changes-By: lintian-brush Fixes: lintian: missing-build-dependency-for-dh_-command See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html - - - - - d1189362 by Andreas Tille at 2022-01-20T10:55:30+01:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 8eefd628 by Andreas Tille at 2022-01-20T11:11:43+01:00 Cleanup d/copyright from duplicates - - - - - 78539a4a by Andreas Tille at 2022-01-20T11:16:07+01:00 Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/control - debian/copyright - + debian/salsa-ci.yml - debian/upstream/metadata - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,8 +1,18 @@ -metastudent (2.0.1-9) UNRELEASED; urgency=medium +metastudent (2.0.1-9) unstable; urgency=medium + * Team upload. * Do not ask for installation of pp-popularity-contest - - -- Andreas Tille <[email protected]> Mon, 01 Feb 2021 14:05:36 +0100 + * Upstream download vanished + * Standards-Version: 4.6.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Add missing build dependency on dh addon. + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. + * Cleanup d/copyright from duplicates + + -- Andreas Tille <[email protected]> Thu, 20 Jan 2022 11:11:50 +0100 metastudent (2.0.1-8) unstable; urgency=medium ===================================== debian/control ===================================== @@ -4,15 +4,16 @@ Uploaders: Tobias Hamp <[email protected]>, Laszlo Kajan <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12) +Build-Depends: debhelper-compat (= 13), debhelper Build-Depends-Indep: dh-python, python3-all, javahelper, default-jdk -Standards-Version: 4.4.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/metastudent Vcs-Git: https://salsa.debian.org/med-team/metastudent.git Homepage: https://rostlab.org/owiki/index.php/Metastudent +Rules-Requires-Root: no Package: metastudent Architecture: all @@ -22,11 +23,11 @@ Depends: ${misc:Depends}, python3, ncbi-blast+-legacy, default-jre, - libgo-perl (>= 0.15-3), + libgo-perl, libipc-run-perl, libgraphviz-perl, libfile-chdir-perl, - metastudent-data (>= 2.0.0) + metastudent-data Description: predictor of Gene Ontology terms from protein sequence Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict ===================================== debian/copyright ===================================== @@ -1,7 +1,7 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: metastudent Upstream-Contact: Tobias Hamp <[email protected]> -Source: ftp://rostlab.org/metastudent/ +Source: https://github.com/Rostlab/MetaStudent Files: * Copyright: 2010-2015, Tobias Hamp <[email protected]> @@ -16,19 +16,29 @@ Copyright: 2010, Ariane Böhm 2010, Yannick Mahlich License: GPL-2+ -Files: metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java +Files: metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java + metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java + metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java + metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java + metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java + metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java + metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java + metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java Copyright: 2010, Thomas Hopf License: GPL-2+ -Files: metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java metastudentPkg/lib/groupB/pp2/tools/RMethods.java metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java +Files: metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java + metastudentPkg/lib/groupB/pp2/tools/RMethods.java Copyright: 2010, Stefanie Kaufmann License: GPL-2+ -Files: metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java +Files: metastudentPkg/lib/groupB/pp2/go/Relations.java + metastudentPkg/lib/groupB/pp2/go/DAG.java Copyright: 2010, Mark Heron License: GPL-2+ -Files: metastudentPkg/lib/groupC/treehandler.pl metastudentPkg/lib/groupC/treehandler_new.pl +Files: metastudentPkg/lib/groupC/treehandler.pl + metastudentPkg/lib/groupC/treehandler_new.pl Copyright: 2010, Peter Hoenigschmid License: GPL-2+ ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,5 @@ +Bug-Database: https://github.com/Rostlab/MetaStudent/issues +Bug-Submit: https://github.com/Rostlab/MetaStudent/issues/new Reference: - Author: > Tobias Hamp and Rebecca Kassner and Stefan Seemayer and @@ -23,3 +25,5 @@ Registry: Entry: metastudent - Name: SciCrunch Entry: NA +Repository: https://github.com/Rostlab/MetaStudent.git +Repository-Browse: https://github.com/Rostlab/MetaStudent ===================================== debian/watch ===================================== @@ -1,5 +1,6 @@ -version=3 -opts="pgpsigurlmangle=s/$/.asc/" ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.orig\.tar\.gz debian uupdate +version=4 +opts=dversionmangle=s/.*/0.No-Site/ \ +https://people.debian.org/~eriberto/ FakeWatchNoUpstreamSiteForThisPackage-(\d\S+)\.gz # Asked for release tags # https://github.com/Rostlab/MetaStudent/issues/13 View it on GitLab: https://salsa.debian.org/med-team/metastudent/-/compare/81b541e8f2fcd71da97ae9aba408a4056372c383...78539a4a1cfccc8ab65d8c655e704057b389b7c1 -- View it on GitLab: https://salsa.debian.org/med-team/metastudent/-/compare/81b541e8f2fcd71da97ae9aba408a4056372c383...78539a4a1cfccc8ab65d8c655e704057b389b7c1 You're receiving this email because of your account on salsa.debian.org.
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