Pierre Gruet pushed to branch master at Debian Med / snpeff
Commits: 7f69c163 by Pierre Gruet at 2021-04-17T23:03:08+02:00 snpeff must depend on default-jre - - - - - 56143cff by Pierre Gruet at 2022-01-22T14:44:17+01:00 Adding Apache-2.0 licence in d/copyright - - - - - 38c74dfb by Pierre Gruet at 2022-01-22T14:58:08+01:00 Setting Standards version to 4.6.0 (no change) - - - - - 75f48e58 by Pierre Gruet at 2022-01-22T15:48:15+01:00 Upload to NEW, targetting experimental - - - - - 3 changed files: - debian/changelog - debian/control - debian/copyright Changes: ===================================== debian/changelog ===================================== @@ -2,4 +2,4 @@ snpeff (4.3t+dfsg1-1) experimental; urgency=medium * Initial release (Closes: #986141) - -- Pierre Gruet <[email protected]> Wed, 31 Mar 2021 15:59:41 +0200 + -- Pierre Gruet <[email protected]> Sat, 22 Jan 2022 14:41:57 +0100 ===================================== debian/control ===================================== @@ -34,7 +34,7 @@ Build-Depends: debhelper-compat (= 13), libapfloat-java, libdistlib-java, scala-library -Standards-Version: 4.5.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/snpeff Vcs-Git: https://salsa.debian.org/med-team/snpeff.git Homepage: https://pcingola.github.io/SnpEff/ @@ -63,7 +63,8 @@ Description: genetic variant annotation and effect prediction toolbox - lib Package: snpeff Architecture: all -Depends: ${java:Depends}, +Depends: default-jre, + ${java:Depends}, ${misc:Depends}, libsnpeff-java (= ${binary:Version}) Suggests: vcfanno ===================================== debian/copyright ===================================== @@ -37,6 +37,12 @@ Files: src/main/java/org/broad/tribble/* Copyright: 2007-2009 The Broad Institute, Inc. and the Massachusetts Institute of Technology License: LGPL-2.1 +Files: src/main/java/org/snpeff/collections/ArrayUtil.java + src/main/java/org/snpeff/collections/BitUtil.java + src/main/java/org/snpeff/collections/OpenBitSet.java +Copyright: Apache Software Foundation +License: Apache-2.0 + Files: debian/* Copyright: 2012 Andreas Tille <[email protected]> 2020-2021 Pierre Gruet <[email protected]> @@ -69,3 +75,7 @@ License: Expat License: LGPL-2.1 On Debian systems the full text of the LGPL-3 can be found in /usr/share/common-licenses/LGPL-2.1 + +License: Apache-2.0 + On Debian systems, the full text of the Apache-2.0 license + can be found in the file '/usr/share/common-licenses/Apache-2.0'. View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4 -- View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4 You're receiving this email because of your account on salsa.debian.org.
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