Pierre Gruet pushed to branch master at Debian Med / snpeff
Commits: 44477ade by Pierre Gruet at 2022-01-23T15:18:37+01:00 Using tags instead of releases in d/watch - - - - - 5560aa4e by Pierre Gruet at 2022-01-23T15:19:03+01:00 Preparing to repack for next upstream version - - - - - de2848b6 by Pierre Gruet at 2022-01-23T15:19:25+01:00 New upstream version 5.1+dfsg - - - - - 225042a6 by Pierre Gruet at 2022-01-23T15:21:45+01:00 Update upstream source from tag 'upstream/5.1+dfsg' Update to upstream version '5.1+dfsg' with Debian dir 175a1d358c5ef274b3594eec0ce8996514008181 - - - - - 753828c2 by Pierre Gruet at 2022-01-29T08:03:16+01:00 Updating dependencies list and related Maven rules, notably switching to junit5 - - - - - c0c63c70 by Pierre Gruet at 2022-01-29T08:04:08+01:00 The path of the config file in the source has moved - - - - - 927014f2 by Pierre Gruet at 2022-01-29T08:05:31+01:00 Now the version number is properly filed in pom.xml - - - - - 0666c5ba by Pierre Gruet at 2022-01-29T08:07:18+01:00 Removing now useless patches - - - - - f9dfd2ce by Pierre Gruet at 2022-01-29T08:08:51+01:00 Simplifying patch to modify the pom with the lowercase artifactId - - - - - 83bc8e73 by Pierre Gruet at 2022-01-29T08:10:43+01:00 Refreshing patch for the launching script and config file - - - - - af35b2a3 by Pierre Gruet at 2022-01-29T14:04:38+01:00 Using Debian-packaged biojava4 instead of biojava6, previously upstream used biojava3 - - - - - 72c6f2c6 by Pierre Gruet at 2022-01-29T14:08:47+01:00 Moving the test classes under src/test and running unit tests only - - - - - d9c4e584 by Pierre Gruet at 2022-01-29T14:09:08+01:00 Disabling tests needing files that are not available - - - - - 07168482 by Pierre Gruet at 2022-01-29T14:09:59+01:00 Marking the doc package as Multi-Arch: foreign - - - - - fab32cc8 by Pierre Gruet at 2022-01-29T14:11:34+01:00 Updating changelog - - - - - 9f0be6b6 by Pierre Gruet at 2022-01-29T14:20:36+01:00 Refreshing d/copyright - - - - - 8a6e5f9d by Pierre Gruet at 2022-01-29T15:15:29+01:00 Adding a Lintian override for a file with very-long-lines - - - - - 30 changed files: - .classpath - .gitignore - + .idea/.gitignore - + .idea/SnpEff.iml - + .idea/compiler.xml - + .idea/encodings.xml - + .idea/inspectionProfiles/Project_Default.xml - + .idea/inspectionProfiles/profiles_settings.xml - + .idea/jarRepositories.xml - + .idea/libraries/Maven__com_fasterxml_jackson_core_jackson_annotations_2_10_5.xml - + .idea/libraries/Maven__com_fasterxml_jackson_core_jackson_core_2_10_5.xml - + .idea/libraries/Maven__com_fasterxml_jackson_core_jackson_databind_2_10_5.xml - + .idea/libraries/Maven__com_github_samtools_htsjdk_2_24_1.xml - + .idea/libraries/Maven__com_google_code_gson_gson_2_8_7.xml - + .idea/libraries/Maven__com_googlecode_charts4j_charts4j_1_3.xml - + .idea/libraries/Maven__com_sun_activation_jakarta_activation_1_2_2.xml - + .idea/libraries/Maven__com_sun_istack_istack_commons_runtime_3_0_12.xml - + .idea/libraries/Maven__commons_cli_commons_cli_1_5_0.xml - + .idea/libraries/Maven__commons_codec_commons_codec_1_15.xml - + .idea/libraries/Maven__commons_io_commons_io_2_11_0.xml - + .idea/libraries/Maven__commons_lang_commons_lang_2_4.xml - + .idea/libraries/Maven__commons_logging_commons_logging_1_1_1.xml - + .idea/libraries/Maven__distlib_distlib_0_9_1.xml - + .idea/libraries/Maven__gov_nih_nlm_ncbi_ngs_java_2_9_0.xml - + .idea/libraries/Maven__jakarta_xml_bind_jakarta_xml_bind_api_2_3_3.xml - + .idea/libraries/Maven__java3d_vecmath_1_3_1.xml - + .idea/libraries/Maven__javax_activation_javax_activation_api_1_2_0.xml - + .idea/libraries/Maven__javax_annotation_javax_annotation_api_1_3_2.xml - + .idea/libraries/Maven__javax_xml_bind_jaxb_api_2_3_1.xml - + .idea/libraries/Maven__net_sf_trove4j_trove4j_3_0_2.xml The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6cff9ccaa34c86af8cd975565267bff523a74aba...8a6e5f9df6dcd3a9662b1c52c18ed6dac838599d -- View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6cff9ccaa34c86af8cd975565267bff523a74aba...8a6e5f9df6dcd3a9662b1c52c18ed6dac838599d You're receiving this email because of your account on salsa.debian.org.
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