Rebecca N. Palmer pushed to branch master at Debian Med / snakemake
Commits: 50113c1d by Rebecca N. Palmer at 2022-02-01T20:25:46+00:00 Tests: skip an FTP-using test. - - - - - 4e527e8b by Rebecca N. Palmer at 2022-02-01T20:27:39+00:00 salsa-ci: run additional reproducibility tests. - - - - - 4 changed files: - debian/changelog - debian/rules - debian/salsa-ci.yml - debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,16 +1,16 @@ -snakemake (6.14.0-1) unstable; urgency=medium +snakemake (6.14.0-1) UNRELEASED; urgency=medium * New upstream release. Refresh patches, d/copyright. * Split up the binary package (main, -doc) to save space. - * Tests: skip a new conda-using test, mark as needs-internet, - copy the test tree to avoid writing to it. + * Tests: skip an FTP-using test and a new conda-using test, + mark as needs-internet, copy the test tree to avoid writing to it. * Don't ship the test suite, as some of it doesn't work from a non-writable directory. * Reproducibility: fix sphinx locale, skip a test that fails under faketime. - * salsa-ci: ignore expected Lintian error. + * salsa-ci: ignore expected Lintian error, test reproducibility more. - -- Rebecca N. Palmer <rebecca_pal...@zoho.com> Mon, 31 Jan 2022 21:12:41 +0000 + -- Rebecca N. Palmer <rebecca_pal...@zoho.com> Tue, 01 Feb 2022 20:23:02 +0000 snakemake (6.12.3-1) unstable; urgency=medium ===================================== debian/rules ===================================== @@ -22,8 +22,10 @@ export PYBUILD_TEST_ARGS=python{version} -m pytest -v {build_dir}/tests/test*.py # python3-tibanna: test_tibanna (possibly also specific to one cloud provider?) # python3-tes: test_tes -# Skipped in build due to network use, but run in autopkgtest: test_ancient test_github_issue1062 -# Tests marked @connected skip themselves in this case +# Skipped due to network use +# skipped in build, but run in autopkgtest: test_ancient +# skipped in both as it uses FTP and some autopkgtest environments are http-only: test_github_issue1062 +# Tests marked @connected skip themselves if network access isn't available # Skipped in build to let reproducibility tests pass (it fails under faketime, with what looks like the outer script but not the rules running under it), but run in autopkgtest: test_symlink_time_handling ===================================== debian/salsa-ci.yml ===================================== @@ -6,3 +6,6 @@ variables: # real but deliberately left in because the obvious fix is # too likely to break things, see README.source SALSA_CI_LINTIAN_SUPPRESS_TAGS: "privacy-breach-uses-embedded-file" +# one of the sphinx inventories seems to be binary garbage - find out why + SALSA_CI_ENABLE_DIFFOSCOPE: 1 + SALSA_CI_ATOMIC_REPROTEST: 1 ===================================== debian/tests/run-unit-test ===================================== @@ -22,4 +22,4 @@ export HOME="${AUTOPKGTEST_TMP}" . /etc/profile.d/modules.sh #See debian/rules for why these are excluded -python3 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_env_modules' +python3 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_env_modules and not test_github_issue1062' View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/1f4fb628f59ccd70805ff2be59ff504b23b67a13...4e527e8b5abd7b9a0528fc469562d2f11f231f2d -- View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/1f4fb628f59ccd70805ff2be59ff504b23b67a13...4e527e8b5abd7b9a0528fc469562d2f11f231f2d You're receiving this email because of your account on salsa.debian.org.
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