Andreas Tille pushed to branch upstream at Debian Med / discosnp
Commits:
c9253acc by Andreas Tille at 2022-02-17T16:58:28+01:00
New upstream version 2.6.2
- - - - -
1 changed file:
- scripts/ClassVCF_creator.py
Changes:
=====================================
scripts/ClassVCF_creator.py
=====================================
@@ -1184,7 +1184,7 @@ class SNPSCLOSE(VARIANT):
table[line][2]=str(self.variantID)+"_"+str(subIDs[line])
table[line][5]="."
table[line][6]=VCFObject.filterField
-
table[line][7]=f"Ty{VCFObject.variantType};Rk={self.rank};UL={self.len_unitig_left};UR={self.len_unitig_right};CL={self.len_contig_left};CR={self.len_contig_right};Genome={nucleoRef};Sd={VCFObject.reverse}"
+
table[line][7]=f"Ty={VCFObject.variantType};Rk={self.rank};UL={self.len_unitig_left};UR={self.len_unitig_right};CL={self.len_contig_left};CR={self.len_contig_right};Genome={nucleoRef};Sd={VCFObject.reverse}"
if VCFObject.filterField=="MULTIPLE" and VCFObject.XA:
table[line][7]+=f";XA={VCFObject.XA}"
#TODO: eviter ces "replace"
View it on GitLab:
https://salsa.debian.org/med-team/discosnp/-/commit/c9253accfb6be207fe4c87e8afaea3ef7df500e2
--
View it on GitLab:
https://salsa.debian.org/med-team/discosnp/-/commit/c9253accfb6be207fe4c87e8afaea3ef7df500e2
You're receiving this email because of your account on salsa.debian.org.
_______________________________________________
debian-med-commit mailing list
[email protected]
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
