Pierre Gruet pushed to branch upstream at Debian Med / picard-tools
Commits:
f3290b0a by Pierre Gruet at 2022-02-18T14:22:54+01:00
New upstream version 2.26.10+dfsg
- - - - -
2 changed files:
- build.gradle
- src/main/java/picard/vcf/GatherVcfs.java
Changes:
=====================================
build.gradle
=====================================
@@ -91,7 +91,9 @@ dependencies {
compile 'org.apache.commons:commons-collections4:4.3'
compile 'commons-lang:commons-lang:2.6'
compile 'com.github.samtools:htsjdk:' + htsjdkVersion
- compile 'org.broadinstitute:barclay:3.0.0'
+ compile 'org.broadinstitute:barclay:4.0.2'
+ compile 'org.apache.logging.log4j:log4j-api:2.17.1'
+ compile 'org.apache.logging.log4j:log4j-core:2.17.1'
compileOnly(googleNio) {
transitive = false
}
=====================================
src/main/java/picard/vcf/GatherVcfs.java
=====================================
@@ -31,7 +31,7 @@ import java.util.stream.Collectors;
/**
* Simple little class that combines multiple VCFs that have exactly the same
set of samples
- * and totally discrete sets of loci.
+ * and nonoverlapping sets of loci.
*
* @author Tim Fennell
*/
View it on GitLab:
https://salsa.debian.org/med-team/picard-tools/-/commit/f3290b0a2acbfd8c8f8845b02007284fe7274f0e
--
View it on GitLab:
https://salsa.debian.org/med-team/picard-tools/-/commit/f3290b0a2acbfd8c8f8845b02007284fe7274f0e
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