Andreas Tille pushed to branch master at Debian Med / nanolyse
Commits: 8f6be49f by Andreas Tille at 2022-02-22T12:42:30+01:00 Fix data file (thanks to the hint of Andrius Merkys) - - - - - 209a09a9 by Andreas Tille at 2022-02-22T12:43:38+01:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - debian/tests/data/README - debian/tests/data/paired_reads.fastq Changes: ===================================== debian/changelog ===================================== @@ -1,8 +1,9 @@ -nanolyse (1.2.0-3) UNRELEASED; urgency=medium +nanolyse (1.2.0-3) unstable; urgency=medium * Make sure autopkgtest is working on the provided data file + * Fix data file (thanks to the hint of Andrius Merkys) - -- Andreas Tille <[email protected]> Tue, 22 Feb 2022 09:30:41 +0100 + -- Andreas Tille <[email protected]> Tue, 22 Feb 2022 12:42:50 +0100 nanolyse (1.2.0-2) unstable; urgency=medium ===================================== debian/tests/data/README ===================================== @@ -1,6 +1,9 @@ This fastq file was taken from package ncbi-blast+ c++/src/algo/blast/blastinput/unit_test/data/paired_reads.fastq +I had to fix this dataset according to the hint by Andrius Merkys + https://lists.debian.org/debian-med/2022/02/msg00101.html + FIXME: I have no idea whether this data set makes any sense at all. -- Andreas Tille <[email protected]> Fri, 15 May 2020 15:27:17 +0200 ===================================== debian/tests/data/paired_reads.fastq ===================================== @@ -1,4 +1,4 @@ -@pair1 (both are read) +@pair1 GAATGTCCGTCTGGGTCTCCTTGTGCTGCGGTCCTGGCAACTCGTAGAATTTCTTACCAAAGTATCGATCCGGGAGATAGTACGATGGATACTCCGCCCTCAGCCTCTCG +pair1 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFF<FFFFFFFFFFFFFFFFFFFFFFFF @@ -6,7 +6,7 @@ BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFB ATGTTTTCCGATCCCGCCCAGGAGTCGGTTGCCACGCAGACGGAGGCACAACCGGTTCCGTCGCCCATCTGCACCCCACTGCTGATGGTGGACGAGGATGGACGAAAGCG +pair2 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFF<FFFFFFFFFFFFFFFFFFFFFFFF [email protected] (only the first is accepted) [email protected] ATGTTTTCCGATCCCGCCCAGGAGTCGGTTGCCACGCAGACGGAGGCACAACCGGTTCCGTCGCCCATCTGCACCCCACTGCTGATGGTGGACGAGGATGGACGAAAGCG +incomplete1.1 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFF<FFFFFFFFFFFFFFFFFFFFFFFF @@ -14,7 +14,7 @@ BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFB CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +incomplete1.2 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFFF [email protected] (only the second is accepted) [email protected] CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +incomplete2.1 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFFF View it on GitLab: https://salsa.debian.org/med-team/nanolyse/-/compare/847f0439ab66d47a512bab6fbea61268ffec4213...209a09a918ad3bef4fa8e29618d35495dbb22118 -- View it on GitLab: https://salsa.debian.org/med-team/nanolyse/-/compare/847f0439ab66d47a512bab6fbea61268ffec4213...209a09a918ad3bef4fa8e29618d35495dbb22118 You're receiving this email because of your account on salsa.debian.org.
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