Nilesh Patra pushed to branch master at Debian Med / nanopolish
Commits: 77819078 by Nilesh Patra at 2022-07-02T14:53:59+05:30 Add opt to link against external slow5lib - - - - - 12c3529a by Nilesh Patra at 2022-07-02T14:54:28+05:30 B-D on libslow5lib - - - - - a6e43c6a by Nilesh Patra at 2022-07-02T14:54:29+05:30 d/rules: export SLOW5LIB=external - - - - - 4937f453 by Nilesh Patra at 2022-07-02T14:58:16+05:30 [skip ci] Interim d/ch - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/link_ext_slow5lib.patch - debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,18 @@ nanopolish (0.14.0-1) UNRELEASED; urgency=medium + * Team Upload. + + [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.1 (routine-update) - TODO: https://salsa.debian.org/med-team/libslow5lib - -- Andreas Tille <[email protected]> Wed, 29 Jun 2022 17:50:34 +0200 + [ Nilesh Patra ] + * Add opt to link against external slow5lib + * B-D on libslow5lib + * d/rules: export SLOW5LIB=external + TODO: Wait for libslow5lib to cross NEW + + -- Nilesh Patra <[email protected]> Sat, 02 Jul 2022 14:48:00 +0530 nanopolish (0.13.3-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -10,7 +10,9 @@ Build-Depends: debhelper-compat (= 13), libfast5-dev, libhts-dev, libeigen3-dev, - libminimap2-dev + libminimap2-dev, + libstreamvbyte-dev, + libslow5-dev Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/nanopolish Vcs-Git: https://salsa.debian.org/med-team/nanopolish.git ===================================== debian/patches/link_ext_slow5lib.patch ===================================== @@ -0,0 +1,15 @@ +Description: Add opt to link against external slow5 +Author: Nilesh Patra <[email protected]> +Last-Update: 2022-07-02 +--- a/Makefile ++++ b/Makefile +@@ -115,6 +115,9 @@ + ifeq ($(SLOW5LIB), install) + SLOW5LIB_LIB = ./slow5lib/lib/libslow5.a + SLOW5LIB_INCLUDE = -I./slow5lib/include/ ++else ++ SLOW5LIB_LIB ?= ++ LIBS += -lslow5 -lstreamvbyte + endif + + ifeq ($(ARM), 1) ===================================== debian/patches/series ===================================== @@ -2,3 +2,4 @@ add-shebang-to-script.patch reproducible.patch fix_remaining_python_interpreters.patch staticMinimap2Library.patch +link_ext_slow5lib.patch ===================================== debian/rules ===================================== @@ -21,6 +21,7 @@ export HDF5=external export EIGEN=external export HTS=external export MINIMAP2=external +export SLOW5LIB=external %: dh $@ --with python3 View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/f7aeae4d993b3dcbab54c63776b56d957bc7482a...4937f453ff8283cdccf224e000422b7ee83cb2d2 -- View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/f7aeae4d993b3dcbab54c63776b56d957bc7482a...4937f453ff8283cdccf224e000422b7ee83cb2d2 You're receiving this email because of your account on salsa.debian.org.
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