Étienne Mollier pushed to branch master at Debian Med / ivar
Commits: 897f6266 by Étienne Mollier at 2022-07-12T22:38:50+02:00 initialize changelog. - - - - - c86f5989 by Étienne Mollier at 2022-07-12T23:05:54+02:00 Add gcc-12.patch: fix ftbfs with gcc-12. Closes: #1012952 - - - - - 0d8d520a by Étienne Mollier at 2022-07-12T23:06:32+02:00 update changelog - - - - - 7caed869 by Étienne Mollier at 2022-07-12T23:06:51+02:00 routine-update: Standards-Version: 4.6.1 - - - - - 6abb2e66 by Étienne Mollier at 2022-07-12T23:08:23+02:00 routine-update: Ready to upload to unstable - - - - - 21970eb8 by Étienne Mollier at 2022-07-12T23:10:27+02:00 d/s/lintian-overrides: update to new lintian semantics. - - - - - 80b59937 by Étienne Mollier at 2022-07-12T23:12:13+02:00 update changelog - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/gcc-12.patch - debian/patches/series - debian/source/lintian-overrides Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +ivar (1.3.1+dfsg-5) unstable; urgency=medium + + * Add gcc-12.patch: fix ftbfs with gcc-12. (Closes: #1012952) + * Standards-Version: 4.6.1 (routine-update) + * d/s/lintian-overrides: update to new lintian semantics. + + -- Étienne Mollier <[email protected]> Tue, 12 Jul 2022 23:11:44 +0200 + ivar (1.3.1+dfsg-4) unstable; urgency=medium [ Andreas Tille ] ===================================== debian/control ===================================== @@ -6,7 +6,7 @@ Section: science Priority: optional Build-Depends: debhelper-compat (= 13), libhts-dev -Standards-Version: 4.6.0 +Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Homepage: https://github.com/andersen-lab/ivar ===================================== debian/patches/gcc-12.patch ===================================== @@ -0,0 +1,31 @@ +Description: fix ftbfs with gcc-12. +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1012952 +Forwarded: no +Last-Update: 2022-07-12 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- ivar.orig/src/call_consensus_pileup.h ++++ ivar/src/call_consensus_pileup.h +@@ -5,6 +5,7 @@ + #include<vector> + #include<algorithm> + #include<string> ++#include<string.h> + #include<regex> + #include<libgen.h> + +--- ivar.orig/src/ivar.cpp ++++ ivar/src/ivar.cpp +@@ -482,9 +482,9 @@ + res = common_variants(g_args.prefix, g_args.min_threshold, files, nfiles); + // Free files, nfiles + for (int i = 0; i < nfiles; ++i) { +- free(files[i]); ++ free(files[i]); + } +- delete files; ++ delete[] files; + } else { + res = common_variants(g_args.prefix, g_args.min_threshold, argv + optind, argc - optind); + } ===================================== debian/patches/series ===================================== @@ -3,3 +3,4 @@ forward-build-options.patch gcc-11.patch gcc-11_2.patch privacy-breach.patch +gcc-12.patch ===================================== debian/source/lintian-overrides ===================================== @@ -1,2 +1,2 @@ # False positive -ivar source: source-is-missing docs/html/menu.js line 26 is 695 characters long (>512) +ivar source: source-is-missing [docs/*] View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/c799ef2cba472c9cf8686b30f2e8f6dab3f8d5ce...80b59937b69d8f20c6415dac8c7f744dec7185b7 -- View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/c799ef2cba472c9cf8686b30f2e8f6dab3f8d5ce...80b59937b69d8f20c6415dac8c7f744dec7185b7 You're receiving this email because of your account on salsa.debian.org.
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