The following commit has been merged in the master branch:
commit a97b1e25089c77add90e90729d9685fcf59d9faa
Author: Charles Plessy <[email protected]>
Date: Wed May 9 08:34:32 2012 +0900
Added a new bibliographic reference.
diff --git a/debian/upstream b/debian/upstream
index 137a90c..5e82e05 100644
--- a/debian/upstream
+++ b/debian/upstream
@@ -2,9 +2,25 @@ Contact: Cole Trapnell <[email protected]>
Homepage: http://cufflinks.cbcb.umd.edu/
Name: Cufflinks
Reference:
- Author: Trapnell C, Williams BA, Pertea G, Mortazavi AM, Kwan G, van Baren
MJ, Salzberg SL, Wold B, Pachter L.
+- Author: Cole Trapnell and Brian A Williams and Geo Pertea and Ali Mortazavi
and Gordon Kwan and Marijke J van Baren and Steven L Salzberg and Barbara J
Wold and Lior Pachter
Title: Transcript assembly and quantification by RNA-Seq reveals unannotated
transcripts and isoform switching during cell differentiation
Journal: Nature Biotechnology
DOI: doi:10.1038/nbt.1621
URL: http://www.nature.com/nbt/journal/v28/n5/full/nbt.1621.html
Year: 2010
+ PubMed: 20436464
+ Pages: 511-515
+ Volume: 28
+ Issue: 5
+ Type: article
+- Author: "Cole Trapnell and Adam Roberts and Loyal Goff and Geo Pertea and
Daehwan Kim and David R Kelley and Harold Pimentel and Steven L Salzberg and
John L Rinn and Lior Pachter"
+ Title: Differential gene and transcript expression analysis of RNA-seq
experiments with TopHat and Cufflinks.
+ Journal: Nat. Protocols
+ Year: 2012
+ DOI: 10.1038/nprot.2012.016
+ URL: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html
+ Pages: 562-578
+ Volume: 7
+ Issue: 8
+ PubMed: 22383036
+ Type: article
--
Transcript assembly, differential expression, and differential regulation for
RNA-Seq.
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