Mohd Bilal pushed to branch master at Debian Med / emmax
Commits: f522fbe1 by Mohammed Bilal at 2022-09-20T13:48:29+05:30 Add patch to fix autopkgtest failures - - - - - 2 changed files: - + debian/patches/fix-autopkgtest.patch - debian/patches/series Changes: ===================================== debian/patches/fix-autopkgtest.patch ===================================== @@ -0,0 +1,34 @@ +Description: Fixes autopkgtest on other archs + There seems to be an issue with comparing a char and an int with the + value -1. Using an int to store the parameter of getopt fixes the + problems with the switch statement always hitting the default case. +Author: Mohammed Bilal <[email protected]> +Forwarded: not-needed +Last-Update: 2022-09-20 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- a/emmax-kin.c ++++ b/emmax-kin.c +@@ -61,7 +61,8 @@ + int i, j, k, n, ac0, ac1, nmiss, nelems, nex, *nexes; + int verbose, ndigits, tped_nheadercols, tfam_nheadercols, flag_autosomal, rand_fill_flag, ibs_flag, gz_flag, hetero_division_flag; + unsigned char *snprow; +- char buf[SZBUF], c; ++ char buf[SZBUF]; ++ int c; + double f, denom; + //long *fibs_sums, *scores, mean_score; + double *fibs_sums, *scores, mean_score; +--- a/emmax.c ++++ b/emmax.c +@@ -100,8 +100,8 @@ + + int main(int argc, char** argv) { + int i, j, k, l, n, nf, q0, ngrids, ndigits, istart, iend, nelems, nmiss, *wids; +- char *kinf, *phenof, *tpedf, *covf, *outf, *inf, *delims, *lbuf, c; +- int mphenoflag, write_eig_flag, gz_flag, tped_nheadercols, tfam_nheadercols, zero_miss_flag, isnpid, gen_kin_method, dosage_flag, gls_flag; ++ char *kinf, *phenof, *tpedf, *covf, *outf, *inf, *delims, *lbuf; ++ int mphenoflag, write_eig_flag, gz_flag, tped_nheadercols, tfam_nheadercols, zero_miss_flag, isnpid, gen_kin_method, dosage_flag, gls_flag, c; + double *phenos, *covs, *kins, *snps; + double sum, llim, ulim, stat, p; + clock_t cstart, cend, sum0, sum1, sum2, clapstart, clapend; ===================================== debian/patches/series ===================================== @@ -6,3 +6,4 @@ clean.patch logfile.patch atlas.patch hardening.patch +fix-autopkgtest.patch View it on GitLab: https://salsa.debian.org/med-team/emmax/-/commit/f522fbe19e07ee53fa14975466212fb70f012e24 -- View it on GitLab: https://salsa.debian.org/med-team/emmax/-/commit/f522fbe19e07ee53fa14975466212fb70f012e24 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
