Pierre Gruet pushed to branch master at Debian Med / picard-tools
Commits: db6080a4 by Pierre Gruet at 2022-09-21T15:07:28+02:00 Updating d/watch after a change in the Github layout - - - - - f17ae3a5 by Pierre Gruet at 2022-09-22T16:29:27+02:00 New upstream version 2.27.4+dfsg - - - - - 2ba244dd by Pierre Gruet at 2022-09-22T16:30:40+02:00 Update upstream source from tag 'upstream/2.27.4+dfsg' Update to upstream version '2.27.4+dfsg' with Debian dir 2192af7cc5e657c4beb6b8f2ba7ce29c3a7ebe95 - - - - - 4118172d by Pierre Gruet at 2022-09-22T16:32:19+02:00 Refreshing patches - - - - - 08a3c99a by Pierre Gruet at 2022-09-22T16:33:15+02:00 Updating changelog - - - - - 94763177 by Pierre Gruet at 2022-09-22T17:22:15+02:00 Refreshing the Lintian override for embedded JS - - - - - 0d58d801 by Pierre Gruet at 2022-09-22T20:26:07+02:00 Upload to unstable - - - - - 30 changed files: - .gitignore - build.gradle - debian/changelog - debian/libpicard-java-doc.lintian-overrides - debian/patches/10-build.xml.patch - debian/watch - src/main/java/picard/analysis/AlignmentSummaryMetrics.java - src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java - src/main/java/picard/analysis/CollectQualityYieldMetrics.java - + src/main/java/picard/analysis/HistogramGenerator.java - src/main/java/picard/analysis/MeanQualityByCycle.java - src/main/java/picard/sam/DuplicationMetrics.java - + src/main/java/picard/sam/DuplicationMetricsFactory.java - src/main/java/picard/sam/FastqToSam.java - + src/main/java/picard/sam/FlowBasedDuplicationMetrics.java - src/main/java/picard/sam/RevertSam.java - src/main/java/picard/sam/markduplicates/CollectDuplicateMetrics.java - src/main/java/picard/sam/markduplicates/EstimateLibraryComplexity.java - src/main/java/picard/sam/markduplicates/MarkDuplicates.java - + src/main/java/picard/sam/markduplicates/MarkDuplicatesForFlowArgumentCollection.java - + src/main/java/picard/sam/markduplicates/MarkDuplicatesForFlowHelper.java - + src/main/java/picard/sam/markduplicates/MarkDuplicatesHelper.java - src/main/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigarIterator.java - src/main/java/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigar.java - src/main/java/picard/sam/markduplicates/util/AbstractMarkDuplicatesCommandLineProgram.java - src/main/java/picard/sam/markduplicates/util/LibraryIdGenerator.java - src/main/java/picard/sam/markduplicates/util/ReadEnds.java - src/main/java/picard/sam/markduplicates/util/ReadEndsForMarkDuplicates.java - src/main/java/picard/util/AccumulateQualityYieldMetrics.java - src/main/java/picard/vcf/GenotypeConcordance.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/85ccfccc0cebe75e1f717a150575cd8d02135f22...0d58d801b9ac66f55fadbbebe17c9b463b4ea05a -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/85ccfccc0cebe75e1f717a150575cd8d02135f22...0d58d801b9ac66f55fadbbebe17c9b463b4ea05a You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
