Nilesh Patra pushed to branch master at Debian Med / blasr
Commits: b59a1aeb by Nilesh Patra at 2022-09-29T15:12:24+00:00 Fix test file substitution regex - - - - - 8306dd3d by Nilesh Patra at 2022-09-29T20:51:05+05:30 Cat the files for future output ref/md5sum mismatch - - - - - f131b550 by Nilesh Patra at 2022-09-29T20:51:42+05:30 Update overrides - - - - - b3f49187 by Nilesh Patra at 2022-09-29T20:52:21+05:30 Upload to unstable - - - - - 3 changed files: - debian/changelog - debian/source/lintian-overrides - debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +blasr (5.3.5+dfsg-5) unstable; urgency=medium + + * Team Upload. + * Update lintian overrides + * Fix test file substitution regex in autopkgtest (Closes: #1018972) + + -- Nilesh Patra <[email protected]> Thu, 29 Sep 2022 20:51:45 +0530 + blasr (5.3.5+dfsg-4) unstable; urgency=medium * Team Upload. ===================================== debian/source/lintian-overrides ===================================== @@ -1,3 +1,3 @@ # False Positives -source: very-long-line-length-in-source-file README.md * -source: very-long-line-length-in-source-file ctest/pgc-fasta.t * +blasr source: very-long-line-length-in-source-file 701 > 512 [README.md:21] +blasr source: very-long-line-length-in-source-file 9883 > 512 [ctest/pgc-fasta.t:28] ===================================== debian/tests/run-unit-test ===================================== @@ -18,12 +18,20 @@ blasr query.fasta ref.fa --minMatch 1 --maxMatch 10 > output if [ $(dpkg-architecture -qDEB_BUILD_ARCH) = "amd64" ] then echo "8db2f4d5737a90d087da90a6779c8d7b output" >> checksums - sed 's/\(PN:BLASR[[:space:]]\+VN:\)5.3.5\([[:space:]]\+CL:blasr\)/\1VERSION\2/' alignment.sam > alignment.sam.check + sed 's/\(PN:BLASR.*VN:\).*5.3.5\(.*\+CL:blasr\)/\1VERSION\2/' alignment.sam > alignment.sam.check + + # Cat orig file for future ref/regressions + echo "alignment.sam" + cat alignment.sam + + # Cat expected file for future ref/regressions + echo "alignment.sam.check:" + cat alignment.sam.check + echo "4ff931c75012f8c2e02c75120351e217 alignment.sam.check" >> checksums - - md5sum --check checksums + md5sum --check checksums echo "Expected output and generated output are same: PASS Test" else [ -s "output" ] && [ -s "alignment.sam" ] || exit 1 echo "PASS Test" -fi \ No newline at end of file +fi View it on GitLab: https://salsa.debian.org/med-team/blasr/-/compare/a516ef9d7c22f7f26b520f1ce199b3a187a40083...b3f49187493ebb64cd84abd406f962d9840f6342 -- View it on GitLab: https://salsa.debian.org/med-team/blasr/-/compare/a516ef9d7c22f7f26b520f1ce199b3a187a40083...b3f49187493ebb64cd84abd406f962d9840f6342 You're receiving this email because of your account on salsa.debian.org.
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