The following commit has been merged in the master branch:
commit 9dd9b1985619244b609496ded13c51c4cfdebc39
Author: Alexandre Mestiashvili <[email protected]>
Date: Sat May 12 12:07:06 2012 +0200
add -msse2 only for intel architectures
diff --git a/debian/patches/fix_makefile_machine_detection.patch
b/debian/patches/fix_makefile_machine_detection.patch
index 864cad7..a527eae 100644
--- a/debian/patches/fix_makefile_machine_detection.patch
+++ b/debian/patches/fix_makefile_machine_detection.patch
@@ -4,7 +4,7 @@ Origin: Debian Med Packaging Team
<[email protected]>
Date: 2012-05-09
--- bowtie2.orig/Makefile
+++ bowtie2/Makefile
-@@ -107,20 +107,33 @@
+@@ -108,20 +108,29 @@
VERSION = $(shell cat VERSION)
EXTRA_FLAGS =
@@ -33,20 +33,16 @@ Date: 2012-05-09
+ ifeq ($(UNAME),'Power Macintosh')
+ ifeq (32,$(BITS))
+ BITS_FLAG = -m32
++ SSE_FLAG =
+ endif
+ ifeq (64,$(BITS))
+ BITS_FLAG = -m64
++ SSE_FLAG =
+ endif
+ endif
-SSE_FLAG=-msse2
-+ SSE_FLAG =
-+ ifeq ($(UNAME),i386)
-+ SSE_FLAG=-msse2
-+ endif
-+ ifeq ($(UNAME),x86_64)
-+ SSE_FLAG=-msse2
-+ endif
++ SSE_FLAG = -msse2
+endif
DEBUG_FLAGS = -O0 -g3 $(BITS_FLAG) $(SSE_FLAG)
--
ultrafast memory-efficient short read aligner
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