Pierre Gruet pushed to branch upstream at Debian Med / picard-tools
Commits: ac518bb5 by Pierre Gruet at 2022-11-01T20:28:47+01:00 New upstream version 2.27.5+dfsg - - - - - 30 changed files: - build.gradle - src/main/java/picard/cmdline/CommandLineProgram.java - src/main/java/picard/fingerprint/CrosscheckFingerprints.java - src/main/java/picard/fingerprint/FingerprintChecker.java - src/main/java/picard/util/SequenceDictionaryUtils.java - src/test/java/picard/analysis/artifacts/CollectSequencingArtifactMetricsTest.java - src/test/java/picard/analysis/directed/CollectHsMetricsTest.java - src/test/java/picard/analysis/replicates/CollectIndependentReplicatesMetricTest.java - src/test/java/picard/fastq/BamToBfqTest.java - src/test/java/picard/fingerprint/CrosscheckFingerprintsTest.java - src/test/java/picard/fingerprint/FingerprintCheckerTest.java - src/test/java/picard/illumina/CheckIlluminaDirectoryTest.java - src/test/java/picard/illumina/CollectIlluminaBasecallingMetricsTest.java - src/test/java/picard/illumina/ExtractIlluminaBarcodesTest.java - src/test/java/picard/illumina/IlluminaBasecallsToFastqTest.java - src/test/java/picard/illumina/IlluminaLaneMetricsCollectorTest.java - src/test/java/picard/illumina/parser/BclParserTest.java - src/test/java/picard/illumina/parser/IlluminaFileUtilTest.java - src/test/java/picard/metrics/CollectRrbsMetricsTest.java - src/test/java/picard/sam/CramCompatibilityTest.java - src/test/java/picard/sam/DownsampleSamTest.java - src/test/java/picard/sam/PositionBasedDownsampleSamTest.java - src/test/java/picard/sam/SamErrorMetric/CollectSamErrorMetricsTest.java - src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java - src/test/java/picard/sam/testers/SamFileTester.java - src/test/java/picard/util/IntervalListToolsTest.java - src/test/java/picard/util/LiftoverVcfTest.java - src/test/java/picard/vcf/GenotypeConcordanceTest.java - src/test/java/picard/vcf/SplitVcfsTest.java - src/test/java/picard/vcf/UpdateVcfSequenceDictionaryTest.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/ac518bb5f410586638e4af3f2a8c885ac740b525 -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/ac518bb5f410586638e4af3f2a8c885ac740b525 You're receiving this email because of your account on salsa.debian.org.
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