Andreas Tille pushed to branch master at Debian Med / roary
Commits: 4c2b5616 by Andreas Tille at 2022-11-16T09:23:41+01:00 Fix autopkgtest - - - - - 2 changed files: - + debian/examples - debian/tests/run-unit-test Changes: ===================================== debian/examples ===================================== @@ -0,0 +1 @@ +t/data/genbank_gbff/* ===================================== debian/tests/run-unit-test ===================================== @@ -3,8 +3,7 @@ # Author: Sascha Steinbiss <[email protected]> set -e -ORIGDIR=$(pwd) -DATADIR=$ORIGDIR/t/data/genbank_gbff +pkg=roary export LC_ALL=C.UTF-8 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then @@ -14,7 +13,8 @@ fi cd $AUTOPKGTEST_TMP -cp $DATADIR/*.gff . +cp -a /usr/share/doc/${pkg}/examples/* . +cp -a /usr/share/doc/${pkg}/expected_files.out . # DEBUG: roary issues "Cannot find the mcxdeblast executable, please ensure its in your PATH" thus checking ... which mcxdeblast @@ -23,4 +23,4 @@ roary -f out *.gff [ -d out ] -find out | LC_ALL=C sort | diff - $ORIGDIR/debian/tests/expected_files.out +find out | LC_ALL=C sort | diff - expected_files.out View it on GitLab: https://salsa.debian.org/med-team/roary/-/commit/4c2b5616bab9d4f7732878ba3928a34b12c79ab4 -- View it on GitLab: https://salsa.debian.org/med-team/roary/-/commit/4c2b5616bab9d4f7732878ba3928a34b12c79ab4 You're receiving this email because of your account on salsa.debian.org.
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