Sascha Steinbiss pushed to branch master at Debian Med / augustus
Commits:
b29db016 by Sascha Steinbiss at 2022-11-21T00:32:03+01:00
skip filterBam auxprogs test on s390x
- - - - -
3 changed files:
- debian/changelog
- + debian/patches/s390x-disable-filterbam-tests.patch
- debian/patches/series
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+augustus (3.5.0+dfsg-2) unstable; urgency=medium
+
+ * Skip filterBam auxprogs test on s390x.
+
+ -- Sascha Steinbiss <sa...@debian.org> Mon, 21 Nov 2022 00:11:53 +0100
+
augustus (3.5.0+dfsg-1) unstable; urgency=medium
* Team upload.
=====================================
debian/patches/s390x-disable-filterbam-tests.patch
=====================================
@@ -0,0 +1,34 @@
+Index: augustus/Makefile
+===================================================================
+--- augustus.orig/Makefile
++++ augustus/Makefile
+@@ -64,17 +64,21 @@ check-python3:
+
+ test: check-python3 all
+ ifeq ("$(shell uname -s -m)","Linux x86_64")
+- $(eval TEST_COMPARE := )
+- $(eval TEST_HTML := --html)
++ cd tests/short && ./execute_test.py --html examples
++ cd tests/short && ./execute_test.py --html bam2hints
++ cd tests/short && ./execute_test.py --html bam2wig
++ cd tests/short && ./execute_test.py --html filterbam
++else ifeq ("$(shell uname -s -m)", "Linux s390x")
++ cd tests/short && ./execute_test.py examples
++ cd tests/short && ./execute_test.py --html bam2hints
++ cd tests/short && ./execute_test.py --html bam2wig
+ else
+ $(info If you run make test on a non-AMD64 architecture or a non-Linux
system (like macOS), most tests will run without the --compare option!)
+- $(eval TEST_COMPARE := )
+- $(eval TEST_HTML := )
++ cd tests/short && ./execute_test.py examples
++ cd tests/short && ./execute_test.py --html bam2hints
++ cd tests/short && ./execute_test.py --html bam2wig
++ cd tests/short && ./execute_test.py --html filterbam
+ endif
+- cd tests/short && ./execute_test.py $(TEST_COMPARE) $(TEST_HTML)
examples
+- cd tests/short && ./execute_test.py --html bam2hints
+- cd tests/short && ./execute_test.py --html bam2wig
+- cd tests/short && ./execute_test.py --html filterbam
+
+ unit_test:
+ cd src && ${MAKE} unittest
=====================================
debian/patches/series
=====================================
@@ -3,3 +3,4 @@ set_installdir
interpreter_paths.patch
switch_cgp_testing_off.patch
disable-compare.patch
+s390x-disable-filterbam-tests.patch
View it on GitLab:
https://salsa.debian.org/med-team/augustus/-/commit/b29db016a53cace78ec452766c240dedb630c482
--
View it on GitLab:
https://salsa.debian.org/med-team/augustus/-/commit/b29db016a53cace78ec452766c240dedb630c482
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