Andreas Tille pushed to branch master at Debian Med / kaptive
Commits: 4f7f9474 by Andreas Tille at 2022-11-27T07:03:09+01:00 Fix watch file - - - - - a8f12255 by Andreas Tille at 2022-11-27T07:03:21+01:00 New upstream version 2.0.4 - - - - - f7604a82 by Andreas Tille at 2022-11-27T07:03:21+01:00 routine-update: New upstream version - - - - - b862cd1d by Andreas Tille at 2022-11-27T07:04:32+01:00 Update upstream source from tag 'upstream/2.0.4' Update to upstream version '2.0.4' with Debian dir 4d766789cf745b114e11a5a09fb6a9559b7df199 - - - - - b5e37cdf by Andreas Tille at 2022-11-27T20:47:41+01:00 Build-Depends: s/python3-all/python3/ since kaptive.py is just a user application - - - - - 39cc6bd8 by Andreas Tille at 2022-11-27T21:04:46+01:00 Add usr/lib to kaptive.install - - - - - 28bdb465 by Andreas Tille at 2022-11-27T21:12:39+01:00 Fix lintian-overrides - - - - - 902b93f7 by Andreas Tille at 2022-11-27T21:25:45+01:00 Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/control - debian/kaptive.install - debian/lintian-overrides - debian/watch - reference_database/Acinetobacter_baumannii_k_locus_primary_reference.gbk Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +kaptive (2.0.4-1) unstable; urgency=medium + + * Fix watch file + * New upstream version + * Build-Depends: s/python3-all/python3/ since kaptive.py is just a + user application + * Add usr/lib to kaptive.install + * Fix lintian-overrides + + -- Andreas Tille <[email protected]> Sun, 27 Nov 2022 21:22:44 +0100 + kaptive (2.0.3-2) unstable; urgency=medium * Team Upload. ===================================== debian/control ===================================== @@ -5,7 +5,7 @@ Section: science Priority: optional Build-Depends: debhelper-compat (= 13), dh-python, - python3-all, + python3, python3-setuptools, python3-biopython <!nocheck>, debhelper ===================================== debian/kaptive.install ===================================== @@ -1 +1,2 @@ usr/bin +usr/lib ===================================== debian/lintian-overrides ===================================== @@ -1,2 +1,2 @@ # see https://lists.debian.org/debian-med/2018/06/msg00043.html -kaptive: script-with-language-extension usr/bin/*.* +kaptive: script-with-language-extension [usr/bin/kaptive.py] ===================================== debian/watch ===================================== @@ -1,3 +1,4 @@ version=4 -https://github.com/katholt/Kaptive/releases .*/v?@ANY_VERSION@@ARCHIVE_EXT@ +opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ + https://github.com/katholt/Kaptive/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@ ===================================== reference_database/Acinetobacter_baumannii_k_locus_primary_reference.gbk ===================================== @@ -39844,13 +39844,13 @@ FEATURES Location/Qualifiers KPLKLEFKGANQFTLTYKDQVVFNGQLNKKNILNTNRGLWQVQLNAQGNLKEQSYTLT KLALPTAVKNFNDIYSVAEKGKVTGVIGLNYLGQDPEHITQVLNNVLTVYHQQNIERK SLESKQTLAFLEKQLPELRKQLEDSEIKFNQFREKYKTVDVNAESELLLKQNIDLEKL - KIELQQKQAELSAKYTNDHPLILQIDAQIAEINKKIADLNNRLTQLPETQRΩLYLQLY - RDVKVNTELYTSLLNSYQQLKIANAGEIGNVRIIDTAVEPVKPVKPKKLIILILSIFI - GGFIGVLIALLRDMMRSGVNDSAQIENELDLPVYATVPRSPIQETRMSILKKKKSIPI - LAVKNSDDIAIESLRSIRTTIHFALANAKNNIIMIAGPAPEVGKSFISTNLATIFAQG - NKRVLLIDADMRRGYMHKYFDIDVKPGLSELLSGQADLSQVLHKTQVTNLDVITRGKS - PTNPSEMLSSMQFKDLLEKFQTQYDHIIIDTPPVLAVTDGIIISQYTGVNLIVARYAK - SHMKELELTVNRFEQAGVKVNGFILNDIQRSSGGGYGYNYAYAYKAQKED" + KIELQQKQAELSAKYTNDHPLILQIDAQIAEINKKIADLNNRLTQLPETQRLYLQLYR + DVKVNTELYTSLLNSYQQLKIANAGEIGNVRIIDTAVEPVKPVKPKKLIILILSIFIG + GFIGVLIALLRDMMRSGVNDSAQIENELDLPVYATVPRSPIQETRMSILKKKKSIPIL + AVKNSDDIAIESLRSIRTTIHFALANAKNNIIMIAGPAPEVGKSFISTNLATIFAQGN + KRVLLIDADMRRGYMHKYFDIDVKPGLSELLSGQADLSQVLHKTQVTNLDVITRGKSP + TNPSEMLSSMQFKDLLEKFQTQYDHIIIDTPPVLAVTDGIIISQYTGVNLIVARYAKS + HMKELELTVNRFEQAGVKVNGFILNDIQRSSGGGYGYNYAYAYKAQKED" CDS complement(2218..2646) /gene="wzb" /codon_start=1 @@ -120811,9 +120811,9 @@ REFERENCE 1 (bases 1 to 22502) JOURNAL PLoS One 8 (4), e62160 (2013) PUBMED 23614028 REFERENCE 1 (bases 1 to 22502) - AUTHORS Lees‐Miller, R.G., Iwashkiw, J.A., Scott, N.E., Seper, A., Vinogradov, + AUTHORS Lees-Miller, R.G., Iwashkiw, J.A., Scott, N.E., Seper, A., Vinogradov, E., Schild, S. and Feldman, M.F., - TITLE A common pathway for O‐linked protein‐glycosylation and synthesis of + TITLE A common pathway for O-linked protein-glycosylation and synthesis of capsule in Acinetobacter baumannii JOURNAL Mol Microbiol 89 (5), 816-830 (2013) PUBMED 23782391 @@ -152506,7 +152506,7 @@ REFERENCE 3 (bases 1 to 25088) Liu,B., Miroshnikov,K.A., Volozhantsev,N.V., Knirel,Y.A. TITLE Revised structure of the capsular polysaccharide of Acinetobacter baumannii LUH5533 (serogroup O1) containing di-N-acetyllegionaminic acid - JOURNAL Russian Chemical Bulletin. 64 (5): 1196–1199 (2016) + JOURNAL Russian Chemical Bulletin. 64 (5): 1196-1199 (2016) COMMENT Sequence obtained for annotation from NCBI accession number CP002522.2. Sequence authors listed in entry. FEATURES Location/Qualifiers View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/4291e514931e7f17251ff9558c9d1886f50ed8e4...902b93f73cb9d369b4e320016486d4874b94b389 -- View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/4291e514931e7f17251ff9558c9d1886f50ed8e4...902b93f73cb9d369b4e320016486d4874b94b389 You're receiving this email because of your account on salsa.debian.org.
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