Author: moeller Date: 2012-05-16 17:38:57 +0000 (Wed, 16 May 2012) New Revision: 10903
Added: trunk/packages/pscan/ trunk/packages/pscan/trunk/ trunk/packages/pscan/trunk/debian/ trunk/packages/pscan/trunk/debian/README.Debian trunk/packages/pscan/trunk/debian/README.source trunk/packages/pscan/trunk/debian/changelog trunk/packages/pscan/trunk/debian/control trunk/packages/pscan/trunk/debian/copyright trunk/packages/pscan/trunk/debian/docs trunk/packages/pscan/trunk/debian/examples trunk/packages/pscan/trunk/debian/pscan-dbg.debhelper.log trunk/packages/pscan/trunk/debian/pscan-dbg.substvars trunk/packages/pscan/trunk/debian/pscan.debhelper.log trunk/packages/pscan/trunk/debian/pscan.dirs trunk/packages/pscan/trunk/debian/pscan.doc-base trunk/packages/pscan/trunk/debian/pscan.install trunk/packages/pscan/trunk/debian/pscan.substvars trunk/packages/pscan/trunk/debian/rules trunk/packages/pscan/trunk/debian/source/ trunk/packages/pscan/trunk/debian/source/format Log: Initial shot a pscan http://159.149.109.9/pscan Added: trunk/packages/pscan/trunk/debian/README.Debian =================================================================== --- trunk/packages/pscan/trunk/debian/README.Debian (rev 0) +++ trunk/packages/pscan/trunk/debian/README.Debian 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,7 @@ +pscan for Debian +---------------- + +Pscan depends on a transcription factor binding site description. The +database "JASPAR" can be downloaded with the Debian 'getData' interface. + + -- Steffen Moeller <[email protected]> Wed, 16 May 2012 18:59:59 +0200 Added: trunk/packages/pscan/trunk/debian/README.source =================================================================== --- trunk/packages/pscan/trunk/debian/README.source (rev 0) +++ trunk/packages/pscan/trunk/debian/README.source 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,9 @@ +pscan for Debian +---------------- + +<this file describes information about the source package, see Debian policy +manual section 4.14. You WILL either need to modify or delete this file> + + + + Added: trunk/packages/pscan/trunk/debian/changelog =================================================================== --- trunk/packages/pscan/trunk/debian/changelog (rev 0) +++ trunk/packages/pscan/trunk/debian/changelog 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,5 @@ +pscan (1.2.1-1) unstable; urgency=low + + * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + + -- Steffen Moeller <[email protected]> Wed, 16 May 2012 18:59:59 +0200 Added: trunk/packages/pscan/trunk/debian/control =================================================================== --- trunk/packages/pscan/trunk/debian/control (rev 0) +++ trunk/packages/pscan/trunk/debian/control 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,26 @@ +Source: pscan +Section: science +Priority: extra +Maintainer: Steffen Moeller <[email protected]> +Build-Depends: debhelper (>= 8.0.0), libgsl0-dev +Standards-Version: 3.9.3 +Homepage: http://159.149.109.9/pscan/ +#Vcs-Git: git://git.debian.org/collab-maint/pscan.git +#Vcs-Browser: http://git.debian.org/?p=collab-maint/pscan.git;a=summary + +Package: pscan +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: search for transcription factor binding sites + pscan finds Over-represented Transcription Factor Binding Site Motifs + in Sequences from Co-Regulated or Co-Expressed Genes. + +Package: pscan-dbg +Architecture: any +Depends: pscan +Section: debug +Description: debug symbols for pscan + This package provides symbols as an annotation to the binary code, + which helps the communication between users who experience a problem + with the package and a developer attempting to understand and fix + the issue. Added: trunk/packages/pscan/trunk/debian/copyright =================================================================== --- trunk/packages/pscan/trunk/debian/copyright (rev 0) +++ trunk/packages/pscan/trunk/debian/copyright 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,34 @@ + +Actually, this is just guessing. The license still demands clarification. + + +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: pscan +Source: <url://example.com> + +Files: * +Copyright: 2012 G.Pesole + 2012 G.Pavesi <[email protected]> + 2012 F.Zambelli <[email protected]> +License: GPL-3.0+ + +Files: debian/* +Copyright: 2012 Steffen Moeller <[email protected]> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". Added: trunk/packages/pscan/trunk/debian/docs =================================================================== --- trunk/packages/pscan/trunk/debian/docs (rev 0) +++ trunk/packages/pscan/trunk/debian/docs 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1 @@ +HELP.txt Added: trunk/packages/pscan/trunk/debian/examples =================================================================== --- trunk/packages/pscan/trunk/debian/examples (rev 0) +++ trunk/packages/pscan/trunk/debian/examples 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1 @@ +example_matrix_file.wil Added: trunk/packages/pscan/trunk/debian/pscan-dbg.debhelper.log =================================================================== --- trunk/packages/pscan/trunk/debian/pscan-dbg.debhelper.log (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan-dbg.debhelper.log 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,49 @@ +dh_auto_configure +dh_auto_build +dh_auto_test +dh_prep +dh_installdirs +dh_auto_install +dh_install +dh_installdocs +dh_installchangelogs +dh_installexamples +dh_installman +dh_installcatalogs +dh_installcron +dh_installdebconf +dh_installemacsen +dh_installifupdown +dh_installinfo +dh_pysupport +dh_installinit +dh_installmenu +dh_installmime +dh_installmodules +dh_installlogcheck +dh_installlogrotate +dh_installpam +dh_installppp +dh_installudev +dh_installwm +dh_installxfonts +dh_installgsettings +dh_bugfiles +dh_ucf +dh_lintian +dh_gconf +dh_icons +dh_perl +dh_usrlocal +dh_link +dh_compress +dh_fixperms +dh_strip +dh_makeshlibs +dh_shlibdeps +dh_installdeb +dh_gencontrol +dh_md5sums +dh_builddeb +dh_builddeb +dh_builddeb Added: trunk/packages/pscan/trunk/debian/pscan-dbg.substvars =================================================================== --- trunk/packages/pscan/trunk/debian/pscan-dbg.substvars (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan-dbg.substvars 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1 @@ +misc:Depends= Added: trunk/packages/pscan/trunk/debian/pscan.debhelper.log =================================================================== --- trunk/packages/pscan/trunk/debian/pscan.debhelper.log (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan.debhelper.log 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,49 @@ +dh_auto_configure +dh_auto_build +dh_auto_test +dh_prep +dh_installdirs +dh_auto_install +dh_install +dh_installdocs +dh_installchangelogs +dh_installexamples +dh_installman +dh_installcatalogs +dh_installcron +dh_installdebconf +dh_installemacsen +dh_installifupdown +dh_installinfo +dh_pysupport +dh_installinit +dh_installmenu +dh_installmime +dh_installmodules +dh_installlogcheck +dh_installlogrotate +dh_installpam +dh_installppp +dh_installudev +dh_installwm +dh_installxfonts +dh_installgsettings +dh_bugfiles +dh_ucf +dh_lintian +dh_gconf +dh_icons +dh_perl +dh_usrlocal +dh_link +dh_compress +dh_fixperms +dh_strip +dh_makeshlibs +dh_shlibdeps +dh_installdeb +dh_gencontrol +dh_md5sums +dh_builddeb +dh_builddeb +dh_builddeb Added: trunk/packages/pscan/trunk/debian/pscan.dirs =================================================================== --- trunk/packages/pscan/trunk/debian/pscan.dirs (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan.dirs 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1 @@ +usr/bin Added: trunk/packages/pscan/trunk/debian/pscan.doc-base =================================================================== --- trunk/packages/pscan/trunk/debian/pscan.doc-base (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan.doc-base 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,10 @@ +Document: pscan +Title: Debian pscan Manual +Author: G.Pesole, + G.Pavesi <[email protected]>, + F.Zambelli <[email protected]> +Abstract: The document resembles a UNIX man page. +Section: science + +Format: text +Files: /usr/share/doc/pscan/HELP.txt.gz Added: trunk/packages/pscan/trunk/debian/pscan.install =================================================================== --- trunk/packages/pscan/trunk/debian/pscan.install (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan.install 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1 @@ +pscan /usr/bin Added: trunk/packages/pscan/trunk/debian/pscan.substvars =================================================================== --- trunk/packages/pscan/trunk/debian/pscan.substvars (rev 0) +++ trunk/packages/pscan/trunk/debian/pscan.substvars 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,2 @@ +shlibs:Depends=libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgsl0ldbl (>= 1.9), libstdc++6 (>= 4.2.1) +misc:Depends= Added: trunk/packages/pscan/trunk/debian/rules =================================================================== --- trunk/packages/pscan/trunk/debian/rules (rev 0) +++ trunk/packages/pscan/trunk/debian/rules 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1,19 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ + +override_dh_auto_build: + g++ -g pscan.cpp -o pscan -O3 -lgsl -lgslcblas + +override_dh_split: + dh_split --dbg-package pscan-dbg Property changes on: trunk/packages/pscan/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/pscan/trunk/debian/source/format =================================================================== --- trunk/packages/pscan/trunk/debian/source/format (rev 0) +++ trunk/packages/pscan/trunk/debian/source/format 2012-05-16 17:38:57 UTC (rev 10903) @@ -0,0 +1 @@ +3.0 (quilt) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
