Andreas Tille pushed to branch master at Debian Med / pyranges
Commits: f97c6011 by Andreas Tille at 2023-01-14T16:31:28+01:00 Adapt to numpy 1.24 - - - - - f2160005 by Andreas Tille at 2023-01-14T16:31:45+01:00 routine-update: Standards-Version: 4.6.2 - - - - - e82b7443 by Andreas Tille at 2023-01-14T16:31:48+01:00 routine-update: No tab in license text - - - - - 5 changed files: - debian/changelog - debian/control - debian/copyright - + debian/patches/numpy_1.24.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +pyranges (0.0.111+ds-4) UNRELEASED; urgency=medium + + * Team upload. + * Adapt to numpy 1.24 + Closes: #1028852 + * Standards-Version: 4.6.2 (routine-update) + * No tab in license text (routine-update) + + -- Andreas Tille <[email protected]> Sat, 14 Jan 2023 16:30:10 +0100 + pyranges (0.0.111+ds-3) unstable; urgency=medium * Team Upload. ===================================== debian/control ===================================== @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13), python3-hypothesis, bedtools, samtools -Standards-Version: 4.6.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pyranges Vcs-Git: https://salsa.debian.org/med-team/pyranges.git Homepage: https://github.com/biocore-ntnu/pyranges ===================================== debian/copyright ===================================== @@ -2,9 +2,9 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: PyRanges Source: https://github.com/biocore-ntnu/pyranges Files-Excluded: tests/test_data/test_sorted.bam.bai - tests/test_data/test_sorted.bam - pyranges/example_data/control.bam.bai - pyranges/example_data/control.bam + tests/test_data/test_sorted.bam + pyranges/example_data/control.bam.bai + pyranges/example_data/control.bam Files: * Copyright: 2019 Endre Bakken Stovner ===================================== debian/patches/numpy_1.24.patch ===================================== @@ -0,0 +1,16 @@ +Description: Adapt to numpy 1.24 +Bug-Debian: https://bugs.debian.org/1028852 +Author: Andreas Tille <[email protected]> +Last-Update: Sat, 14 Jan 2023 16:30:10 +0100 + +--- a/tests/test_binary.py ++++ b/tests/test_binary.py +@@ -232,7 +232,7 @@ def test_coverage(gr, gr2, strandedness) + names= + "Chromosome Start End Name Score Strand NumberOverlaps FractionOverlaps" + .split(), +- dtype={"FractionOverlap": np.float}, ++ dtype={"FractionOverlap": float}, + sep="\t") + + result = gr.coverage(gr2, strandedness=strandedness) ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ fix_dtype.patch reorder.patch +numpy_1.24.patch View it on GitLab: https://salsa.debian.org/med-team/pyranges/-/compare/0e19f822b0415b829bed9f69a0dbad8002a126cd...e82b74431b59ca9200f038437ad2edd7fa0d9441 -- View it on GitLab: https://salsa.debian.org/med-team/pyranges/-/compare/0e19f822b0415b829bed9f69a0dbad8002a126cd...e82b74431b59ca9200f038437ad2edd7fa0d9441 You're receiving this email because of your account on salsa.debian.org.
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