Nilesh Patra pushed to branch master at Debian Med / macsyfinder
Commits: 4cdf3fbb by Nilesh Patra at 2023-01-16T08:41:32+05:30 Add patch to fix random failure on systems with specific configuration (Closes: #1028774) - - - - - 91126442 by Nilesh Patra at 2023-01-16T08:42:20+05:30 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/join-threads-for-concurrency.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,9 +1,15 @@ -macsyfinder (2.0-2) UNRELEASED; urgency=medium +macsyfinder (2.0-2) unstable; urgency=medium + [ Andreas Tille ] * Team upload. * Create sensible upstream source filename - -- Andreas Tille <[email protected]> Tue, 20 Sep 2022 09:57:19 +0200 + [ Nilesh Patra ] + * Bump Standards-Version to 4.6.2 (no changes needed) + * Add patch to fix random failure on systems with + specific configuration (Closes: #1028774) + + -- Nilesh Patra <[email protected]> Mon, 16 Jan 2023 08:42:05 +0530 macsyfinder (2.0-1) unstable; urgency=medium ===================================== debian/patches/join-threads-for-concurrency.patch ===================================== @@ -0,0 +1,35 @@ +Description: The unpatched code does not make much sense as this is iterating over all threads + and later joining one of them. Instead keep joining rest of the threads, as was likely the intention +Author: Nilesh Patra <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1028774 +Forwarded: https://github.com/gem-pasteur/macsyfinder/issues/58 +Last-Update: 2023-01-16 +--- a/tests/test_Report.py ++++ b/tests/test_Report.py +@@ -370,7 +370,7 @@ + for t in threading.enumerate(): + if t is main_thread: + continue +- t.join() ++ t.join() + + # gene, model, hit_id, hit_seq_length replicon_name, pos_hit, i_eval, score, + # profile_coverage, sequence_coverage, begin_match, end_match +@@ -461,7 +461,7 @@ + for t in threading.enumerate(): + if t is main_thread: + continue +- t.join() ++ t.join() + + # gene, model, hit_id, hit_seq_length replicon_name, pos_hit, i_eval, score, + # profile_coverage, sequence_coverage, begin_match, end_match +@@ -540,7 +540,7 @@ + for t in threading.enumerate(): + if t is main_thread: + continue +- t.join() ++ t.join() + + # gene, model, hit_id, hit_seq_length replicon_name, pos_hit, i_eval, score, + # profile_coverage, sequence_coverage, begin_match, end_match ===================================== debian/patches/series ===================================== @@ -2,3 +2,4 @@ skip_failing_test.patch privacy fix-test-parse.patch do_not_test_parse_model_old_syntax.patch +join-threads-for-concurrency.patch View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/compare/94dc7bcb4b612903d33699d7c27cf1667e93e901...91126442f92960a79501783ff9d2a4e3fa5bea6d -- View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/compare/94dc7bcb4b612903d33699d7c27cf1667e93e901...91126442f92960a79501783ff9d2a4e3fa5bea6d You're receiving this email because of your account on salsa.debian.org.
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