Pierre Gruet pushed to branch master at Debian Med / snpeff
Commits: f9b9e255 by Pierre Gruet at 2023-01-20T20:55:27+01:00 Lowering heap allocation on non 64-bit machines - - - - - 4b8e8d09 by Pierre Gruet at 2023-01-20T20:55:58+01:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/lowering_heap_allocation.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +snpeff (5.1+d+dfsg-3) unstable; urgency=medium + + * Lowering heap allocation for non 64-bit architectures + + -- Pierre Gruet <[email protected]> Fri, 20 Jan 2023 20:55:32 +0100 + snpeff (5.1+d+dfsg-2) unstable; urgency=medium * Depending on biojava6 instead of biojava5 ===================================== debian/patches/lowering_heap_allocation.patch ===================================== @@ -0,0 +1,21 @@ +Description: lowering heap allocation so that it passes on all supported + architectures; keeping it as is for 64-bit arches. +Author: Pierre Gruet <[email protected]> +Forwarded: not-needed +Last-Update: 2023-01-20 + +--- a/scripts/snpEff ++++ b/scripts/snpEff +@@ -15,7 +15,11 @@ + + jardir=/usr/share/java + +-default_jvm_mem_opts="-Xms1g -Xmx8g" ++if dpkg --print-architecture | grep -q "64" ; then ++ default_jvm_mem_opts="-Xms1g -Xmx8g" ++else ++ default_jvm_mem_opts="-Xms1g -Xmx3800m" ++fi + jvm_mem_opts="" + jvm_prop_opts="" + pass_args="" ===================================== debian/patches/series ===================================== @@ -3,3 +3,4 @@ update_launching_script_and_config_file_for_Debian.patch use_fastq_from_biojava6.patch omit_unused_junit_classes_and_integration_tests.patch exclude_tests_with_missing_data.patch +lowering_heap_allocation.patch View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/efe1f764e9da32a3b38f9495d6ba8de27d9ee88f...4b8e8d096516fd5eb0f3cb50f34876113c1298f4 -- View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/efe1f764e9da32a3b38f9495d6ba8de27d9ee88f...4b8e8d096516fd5eb0f3cb50f34876113c1298f4 You're receiving this email because of your account on salsa.debian.org.
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