Aaron M. Ucko pushed to branch master at Debian Med / skesa
Commits: 01c51326 by Aaron M. Ucko at 2023-01-22T13:32:27-05:00 Start work on skesa 2.4.0-6. - - - - - 16344bf4 by Aaron M. Ucko at 2023-01-22T13:33:17-05:00 debian/patches/no_sse4.2.patch (new): Don't use SSE 4.2. It's a baseline violation on x86, and entirely unavailable elsewhere. - - - - - fcf90e16 by Aaron M. Ucko at 2023-01-22T13:34:04-05:00 d/patches/hardening.patch: Reinstate use of dpkg-supplied CFLAGS. The addition accidentally got lost in the course of updating use_debian_packaged_ngs-sdk.patch. - - - - - c9036203 by Aaron M. Ucko at 2023-01-22T13:35:16-05:00 Finalize skesa 2.4.0-6 for unstable. - - - - - 4 changed files: - debian/changelog - debian/patches/hardening.patch - + debian/patches/no_sse4.2.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +skesa (2.4.0-6) unstable; urgency=medium + + * debian/patches/hardening.patch: Reinstate use of dpkg-supplied CFLAGS. + The addition accidentally got lost in the course of updating + use_debian_packaged_ngs-sdk.patch. + * debian/patches/no_sse4.2.patch (new): Don't use SSE 4.2. It's a + baseline violation on x86, and entirely unavailable elsewhere. + + -- Aaron M. Ucko <[email protected]> Sun, 22 Jan 2023 13:35:16 -0500 + skesa (2.4.0-5) unstable; urgency=medium [ Andreas Tille ] ===================================== debian/patches/hardening.patch ===================================== @@ -6,8 +6,12 @@ Index: b/Makefile =================================================================== --- a/Makefile +++ b/Makefile -@@ -43,7 +43,7 @@ CC = c++ -std=c++11 -fdiagnostics-color= - CFLAGS = -Wall -Wno-format-y2k -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \ +@@ -40,10 +40,10 @@ NGS_INCL := -I $(NGS_PATH)/include + NGS_LIB := -L $(NGS_PATH)/lib64 + + CC = c++ -std=c++11 -fdiagnostics-color=never +-CFLAGS = -Wall -Wno-format-y2k -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \ ++CFLAGS += -Wall -Wno-format-y2k -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \ -fomit-frame-pointer -msse4.2 $(BOOST_INCL) $(NGS_INCL) $(VDB_INCL) -LIBS = -lngs-c++ -lncbi-vdb -lzstd \ ===================================== debian/patches/no_sse4.2.patch ===================================== @@ -0,0 +1,13 @@ +Index: b/Makefile +=================================================================== +--- a/Makefile ++++ b/Makefile +@@ -41,7 +41,7 @@ NGS_LIB := -L $(NGS_PATH)/lib64 + + CC = c++ -std=c++11 -fdiagnostics-color=never + CFLAGS += -Wall -Wno-format-y2k -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \ +- -fomit-frame-pointer -msse4.2 $(BOOST_INCL) $(NGS_INCL) $(VDB_INCL) ++ -fomit-frame-pointer $(BOOST_INCL) $(NGS_INCL) $(VDB_INCL) + + LIBS += -lngs-c++ -lncbi-vdb -lzstd \ + $(BOOST_LIB) \ ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ use_debian_packaged_ngs-sdk.patch hardening.patch link_boost_dynamically.patch +no_sse4.2.patch View it on GitLab: https://salsa.debian.org/med-team/skesa/-/compare/5208d7218d3c5043c6950f140981271f4bcc6467...c903620376731d46db778c6bdb693873aea6a0cb -- View it on GitLab: https://salsa.debian.org/med-team/skesa/-/compare/5208d7218d3c5043c6950f140981271f4bcc6467...c903620376731d46db778c6bdb693873aea6a0cb You're receiving this email because of your account on salsa.debian.org.
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