Pierre Gruet pushed to branch master at Debian Med / igv
Commits: 2f54090b by Pierre Gruet at 2023-02-01T22:36:03+01:00 New upstream version 2.16.0+dfsg - - - - - 5bd0a680 by Pierre Gruet at 2023-02-01T22:38:26+01:00 Update upstream source from tag 'upstream/2.16.0+dfsg' Update to upstream version '2.16.0+dfsg' with Debian dir 2e5c1d3a252f902ca80394fa1d0e34e1796113cc - - - - - ca6c4657 by Pierre Gruet at 2023-02-01T22:45:48+01:00 Refreshing patches - - - - - c2ed8131 by Pierre Gruet at 2023-02-01T22:47:38+01:00 Upload to unstable - - - - - 30 changed files: - debian/changelog - debian/patches/gradle_dependencies.patch - debian/patches/omit_aws_stuff.patch - src/main/java/module-info.java - src/main/java/org/broad/igv/Globals.java - src/main/java/org/broad/igv/data/IGVDatasetParser.java - src/main/java/org/broad/igv/data/seg/FreqData.java - src/main/java/org/broad/igv/feature/FeatureUtils.java - src/main/java/org/broad/igv/feature/PSLRecord.java - src/main/java/org/broad/igv/feature/genome/GenomeManager.java - src/main/java/org/broad/igv/feature/tribble/PSLCodec.java - src/main/java/org/broad/igv/prefs/Constants.java - src/main/java/org/broad/igv/prefs/IGVPreferences.java - src/main/java/org/broad/igv/sam/Alignment.java - src/main/java/org/broad/igv/sam/AlignmentRenderer.java - src/main/java/org/broad/igv/sam/AlignmentTrack.java - src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java - src/main/java/org/broad/igv/sam/CoverageTrack.java - src/main/java/org/broad/igv/sam/ReadStats.java - src/main/java/org/broad/igv/sam/SAMAlignment.java - + src/main/java/org/broad/igv/sam/SMRTKineticsDecoder.java - src/main/java/org/broad/igv/sam/reader/MergedAlignmentReader.java - + src/main/java/org/broad/igv/sam/smrt/SMRTKinetics.java - + src/main/java/org/broad/igv/sam/smrt/SMRTKineticsDecoder.java - + src/main/java/org/broad/igv/sam/smrt/SMRTKineticsRenderer.java - src/main/java/org/broad/igv/sashimi/SashimiJunctionRenderer.java - src/main/java/org/broad/igv/tools/converters/ExpressionFormatter.java - src/main/java/org/broad/igv/track/AbstractTrack.java - src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java - src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/d93dc52ce6080c70dfed51a454ad3d48a7b65b4f...c2ed81317b64d09946d7ed6edbedf549241d8309 -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/d93dc52ce6080c70dfed51a454ad3d48a7b65b4f...c2ed81317b64d09946d7ed6edbedf549241d8309 You're receiving this email because of your account on salsa.debian.org.
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