Andreas Tille pushed to branch master at Debian Med / libwfa2
Commits: 34b70b7e by Andreas Tille at 2023-02-04T09:12:16+01:00 New upstream version 2.3.2 - - - - - 7c3b640c by Andreas Tille at 2023-02-04T09:12:16+01:00 routine-update: New upstream version - - - - - 785cff29 by Andreas Tille at 2023-02-04T09:12:32+01:00 Update upstream source from tag 'upstream/2.3.2' Update to upstream version '2.3.2' with Debian dir 04124c3970a4032e8466ad35e6a0e1a070233249 - - - - - 538a38aa by Andreas Tille at 2023-02-04T09:12:48+01:00 Set upstream metadata fields: Repository. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 4553b3a4 by Andreas Tille at 2023-02-04T09:13:36+01:00 Upstream has applied patch - - - - - 436d506c by Andreas Tille at 2023-02-04T09:15:00+01:00 Upload to unstable - - - - - 5 changed files: - CMakeLists.txt - debian/changelog - − debian/patches/series - − debian/patches/shared_and_static.patch - debian/upstream/metadata Changes: ===================================== CMakeLists.txt ===================================== @@ -1,3 +1,10 @@ +# For Debian currently with +# +# cd build +# cmake -DCMAKE_BUILD_TYPE=RelWithDebInfo .. +# make +# make test +# make install # See below option statements and the README for build information cmake_minimum_required(VERSION 3.16) @@ -83,8 +90,16 @@ include_directories(.) file(GLOB INCLUDES wavefront/*.h* + ) +file(GLOB UTILS_INCLUDES utils/*.h* ) +file(GLOB ALIGNMENT_INCLUDES + alignment/*.h* + ) +file(GLOB SYSTEM_INCLUDES + system/*.h* + ) set(wfa2lib_SOURCE wavefront/wavefront_align.c @@ -111,12 +126,30 @@ set(wfa2lib_SOURCE wavefront/wavefront_plot.c wavefront/wavefront_slab.c wavefront/wavefront_unialign.c + system/mm_stack.c + system/mm_allocator.c + system/profiler_counter.c + system/profiler_timer.c + utils/bitmap.c + utils/dna_text.c + utils/sequence_buffer.c + utils/vector.c + utils/commons.c + utils/heatmap.c + utils/string_padded.c + alignment/affine2p_penalties.c + alignment/affine_penalties.c + alignment/cigar.c + alignment/score_matrix.c ) - -add_library(wfa +add_library(wfa2_static ${wfa2lib_SOURCE} ) +add_library(wfa2 SHARED ${wfa2lib_SOURCE}) +set_target_properties(wfa2_static PROPERTIES OUTPUT_NAME wfa2) +set_target_properties(wfa2 PROPERTIES SOVERSION 0) + # ---- Get version @@ -148,6 +181,10 @@ add_wfa_test() # ---- Install -install(TARGETS wfa ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ) +install(TARGETS wfa2_static ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ) +install(TARGETS wfa2 ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ) -install(FILES ${INCLUDES} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/wfa2lib) +install(FILES ${INCLUDES} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/wfa2lib/wavefront) +install(FILES ${UTILS_INCLUDES} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/wfa2lib/utils) +install(FILES ${ALIGNMENT_INCLUDES} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/wfa2lib/alignment) +install(FILES ${SYSTEM_INCLUDES} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/wfa2lib/system) ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +libwfa2 (2.3.2-1) unstable; urgency=medium + + * New upstream version + + -- Andreas Tille <[email protected]> Sat, 04 Feb 2023 09:14:13 +0100 + libwfa2 (2.3.1-2) unstable; urgency=medium * Source-only upload ===================================== debian/patches/series deleted ===================================== @@ -1 +0,0 @@ -shared_and_static.patch ===================================== debian/patches/shared_and_static.patch deleted ===================================== @@ -1,30 +0,0 @@ -Author: Andreas Tille <[email protected]> -Last-Update: Thu, 26 Jan 2023 18:01:17 +0100 -Description: Create shared and static lib - ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -114,9 +114,13 @@ set(wfa2lib_SOURCE - ) - - --add_library(wfa -+add_library(wfa2_static - ${wfa2lib_SOURCE} - ) -+add_library(wfa2 SHARED ${wfa2lib_SOURCE}) -+set_target_properties(wfa2_static PROPERTIES OUTPUT_NAME wfa2) -+set_target_properties(wfa2 PROPERTIES SOVERSION 0) -+ - - # ---- Get version - -@@ -148,6 +152,7 @@ add_wfa_test() - - # ---- Install - --install(TARGETS wfa ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ) -+install(TARGETS wfa2_static ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ) -+install(TARGETS wfa2 ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ) - - install(FILES ${INCLUDES} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/wfa2lib) ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,5 @@ --- Bug-Database: https://github.com/smarco/WFA2-lib/issues Bug-Submit: https://github.com/smarco/WFA2-lib/issues/new +Repository: https://github.com/smarco/WFA2-lib.git Repository-Browse: https://github.com/smarco/WFA2-lib View it on GitLab: https://salsa.debian.org/med-team/libwfa2/-/compare/8486a48ea48db4f2f7b23a3f27a9cae44e8b9209...436d506caf3b9532f0156825fe15167c2e42236c -- View it on GitLab: https://salsa.debian.org/med-team/libwfa2/-/compare/8486a48ea48db4f2f7b23a3f27a9cae44e8b9209...436d506caf3b9532f0156825fe15167c2e42236c You're receiving this email because of your account on salsa.debian.org.
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