Andreas Tille pushed to branch master at Debian Med / python-cgelib
Commits: a9fa57b2 by Andreas Tille at 2023-07-04T20:29:42+02:00 Fix Python3 syntax - - - - - 3 changed files: - debian/changelog - + debian/patches/python3_syntax.patch - + debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +python-cgelib (0.7.3-3) UNRELEASED; urgency=medium + + * Fix Python3 syntax + Closes: #1040282 + + -- Andreas Tille <[email protected]> Tue, 04 Jul 2023 20:28:19 +0200 + python-cgelib (0.7.3-2) unstable; urgency=medium * Source-only upload ===================================== debian/patches/python3_syntax.patch ===================================== @@ -0,0 +1,38 @@ +Description: Fix Python3 syntax +Bug-Debian: https://bugs.debian.org/1040282 +Author: Andreas Tille <[email protected]> +Last-Update: Tue, 04 Jul 2023 20:28:19 +0200 + +--- a/src/cgelib/alignment/KMA/read_files.py ++++ b/src/cgelib/alignment/KMA/read_files.py +@@ -95,7 +95,7 @@ class KMA_Result(dict): + while iter_true: + list_hits = [] + for kma_file in self.files: +- if kma_file is "VCF" and len(self.files) > 1: ++ if kma_file == "VCF" and len(self.files) > 1: + if vcf_entry is None: + entry = self._get_entry(kma_file) + if entry is None: +--- a/src/cgelib/alignment/aligner.py ++++ b/src/cgelib/alignment/aligner.py +@@ -243,7 +243,7 @@ class BlastNAligner(_Aligner): + def get_header_format(alignment_parameters): + file_format, header_format = BlastNAligner.get_output_format( + alignment_parameters=alignment_parameters) +- if file_format is 5: ++ if file_format == 5: + header = None + else: + if header_format is None: +--- a/src/cgelib/alignment/blast/read_files.py ++++ b/src/cgelib/alignment/blast/read_files.py +@@ -68,7 +68,7 @@ class BLASTN_Result(dict): + result_file = ResultFile(type=aln_file, file_path=file_path, + read_method=iterator_result) + if header is not None: +- if aln_file is "XML": ++ if aln_file == "XML": + raise ValueError("No header can be defined when using an XML" + " file") + else: ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +python3_syntax.patch View it on GitLab: https://salsa.debian.org/med-team/python-cgelib/-/commit/a9fa57b2711dc77004645136e401534495b7910d -- View it on GitLab: https://salsa.debian.org/med-team/python-cgelib/-/commit/a9fa57b2711dc77004645136e401534495b7910d You're receiving this email because of your account on salsa.debian.org.
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