Andreas Tille pushed to branch master at Debian Med / gubbins
Commits: 7b51c9e5 by Andreas Tille at 2023-08-17T08:23:54+02:00 gubbins_drawer was removed upstream so do not link to it any more - - - - - 9a839643 by Andreas Tille at 2023-08-17T08:39:50+02:00 Enable building twice in a row - - - - - d3ff9795 by Andreas Tille at 2023-08-17T08:40:37+02:00 Set upstream metadata fields: Repository. Changes-By: lintian-brush - - - - - 5f682194 by Andreas Tille at 2023-08-17T09:24:15+02:00 Fix lintian-overrides - - - - - 64d9841b by Andreas Tille at 2023-08-17T09:28:30+02:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - + debian/clean - − debian/gubbins_drawer.1 - debian/links - debian/lintian-overrides - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +gubbins (3.3.0-3) unstable; urgency=medium + + * gubbins_drawer was removed upstream so do not link to it any more + Closes: #986238 + * Enable building twice in a row + Closes: #1044465 + * Set upstream metadata fields: Repository. + * Fix lintian-overrides + + -- Andreas Tille <[email protected]> Thu, 17 Aug 2023 09:25:33 +0200 + gubbins (3.3.0-2) unstable; urgency=medium * Test-Depends: iqtree ===================================== debian/clean ===================================== @@ -0,0 +1 @@ +tests/run_all_tests-* ===================================== debian/gubbins_drawer.1 deleted ===================================== @@ -1,21 +0,0 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.3. -.TH GUBBINS_DRAWER "1" "June 2016" "gubbins_drawer 2.0.0" "User Commands" -.SH NAME -gubbins_drawer \- draw results for gubbins phylogenetic analysis of genome sequences -.SH SYNOPSIS -.B gubbins_drawer -[\fI\,options\/\fR] \fI\,args\/\fR -.SH OPTIONS -.TP -\fB\-h\fR, \fB\-\-help\fR -show this help message and exit -.IP -Output Options: -.TP -\fB\-o\fR FILE, \fB\-\-output\fR=\fI\,FILE\/\fR -output file name [default= test.pdf] -.TP -\fB\-t\fR TREE, \fB\-\-tree\fR=\fI\,TREE\/\fR -tree file to align tab files to -.SH AUTHOR -This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. ===================================== debian/links ===================================== @@ -1,2 +1 @@ usr/share/gubbins/run_gubbins.py usr/bin/run_gubbins -usr/share/gubbins/scripts/gubbins_drawer.py usr/bin/gubbins_drawer ===================================== debian/lintian-overrides ===================================== @@ -1,4 +1,4 @@ # as per lintian info this warning is overridden -gubbins: non-dev-pkg-with-shlib-symlink usr/lib/*/libgubbins.so.* usr/lib/*/libgubbins.so +gubbins: link-to-shared-library-in-wrong-package usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 [usr/lib/x86_64-linux-gnu/libgubbins.so] gubbins: package-name-doesnt-match-sonames libgubbins0 gubbins: no-symbols-control-file usr/lib/*/libgubbins.so.* \ No newline at end of file ===================================== debian/rules ===================================== @@ -30,4 +30,11 @@ override_dh_clean: dh_clean rm -rf python/*.egg-info python/build python/Makefile find . -name "*.pyc" -delete - rm -rf python/output_alignment python/tmp* + rm -rf python/output_alignment python/tmp* tests/.deps + +override_dh_auto_test: + # make sure test data will not be changed (at least tests/data/multiple_recombinations.tre is removed in the test) + cp -a tests/data tests/data.save + dh_auto_test + rm -rf tests/data + mv tests/data.save tests/data ===================================== debian/upstream/metadata ===================================== @@ -24,7 +24,7 @@ Registry: Entry: NA - Name: conda:bioconda Entry: gubbins -Repository: https://github.com/sanger-pathogens/gubbins.git +Repository: https://github.com/nickjcroucher/gubbins.git Repository-Browse: https://github.com/nickjcroucher/gubbins Bug-Database: https://github.com/nickjcroucher/gubbins/issues Bug-Submit: https://github.com/nickjcroucher/gubbins/issues/new View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/70f1a835938684a62cd84abfd15d6dc786db02ec...64d9841b2a475f5c7442ff5e5468a64df66097df -- View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/70f1a835938684a62cd84abfd15d6dc786db02ec...64d9841b2a475f5c7442ff5e5468a64df66097df You're receiving this email because of your account on salsa.debian.org.
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