Étienne Mollier pushed to branch upstream at Debian Med / augur
Commits: cf0dadad by Étienne Mollier at 2023-08-20T17:56:51+02:00 New upstream version 22.3.0 - - - - - 28 changed files: - .github/workflows/ci.yaml - CHANGES.md - augur/__version__.py - augur/ancestral.py - augur/filter/include_exclude_rules.py - augur/refine.py - tests/builds/zika/results/nt_muts.json - − tests/functional/ancestral.t - − tests/functional/ancestral/aligned.fasta - + tests/functional/ancestral/cram/_setup.sh - + tests/functional/ancestral/cram/default-nucleotide-reconstruction.t - + tests/functional/ancestral/cram/infer-ambiguous-nucleotides.t - + tests/functional/ancestral/cram/infer-amino-acid-sequences-with-missing-arguments.t - + tests/functional/ancestral/cram/infer-amino-acid-sequences-with-root-sequence.t - + tests/functional/ancestral/cram/infer-amino-acid-sequences.t - + tests/functional/ancestral/cram/keep-ambiguous-nucleotides.t - + tests/functional/ancestral/data/aa_sequences_2K.fasta - + tests/functional/ancestral/data/aa_sequences_CA.fasta - + tests/functional/ancestral/data/aa_sequences_ENV.fasta - + tests/functional/ancestral/data/aa_sequences_MP.fasta - + tests/functional/ancestral/data/aa_sequences_NS1.fasta - + tests/functional/ancestral/data/aa_sequences_NS2A.fasta - + tests/functional/ancestral/data/aa_sequences_NS2B.fasta - + tests/functional/ancestral/data/aa_sequences_NS3.fasta - + tests/functional/ancestral/data/aa_sequences_NS4A.fasta - + tests/functional/ancestral/data/aa_sequences_NS4B.fasta - + tests/functional/ancestral/data/aa_sequences_NS5.fasta - + tests/functional/ancestral/data/aa_sequences_PRO.fasta The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/augur/-/commit/cf0dadad6b6fa6f7fb419cc003b419852a5c61ec -- View it on GitLab: https://salsa.debian.org/med-team/augur/-/commit/cf0dadad6b6fa6f7fb419cc003b419852a5c61ec You're receiving this email because of your account on salsa.debian.org.
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