Aaron M. Ucko pushed to branch master at Debian Med / ncbi-blastplus
Commits: ad472d06 by Aaron M. Ucko at 2023-09-04T22:32:21-04:00 Start work on ncbi-blast2+ 2.12.0+ds-4 to downgrade #891197. - - - - - d41ab8a0 by Aaron M. Ucko at 2023-09-04T22:32:48-04:00 debian/control: Drop build dependency on libpcre3-dev (#891197). PCRE2 support isn't ready yet, but there's a convenience copy of classic PCRE that will suffice for now. (Partly addresses #891197.) - - - - - f6feb225 by Aaron M. Ucko at 2023-09-04T22:35:34-04:00 debian/source/lintian-overrides: Accommodate bracketed paths. - - - - - d7eeaa54 by Aaron M. Ucko at 2023-09-04T22:36:10-04:00 routine-update: Standards-Version: 4.6.2 - - - - - b6a87ef6 by Aaron M. Ucko at 2023-09-04T22:36:14-04:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - 9a9542de by Aaron M. Ucko at 2023-09-04T22:39:41-04:00 Refer to common license file for Apache-2.0. Changes-By: lintian-brush Fixes: lintian: copyright-does-not-refer-to-common-license-file See-also: https://lintian.debian.org/tags/copyright-does-not-refer-to-common-license-file.html Fixes: lintian: copyright-not-using-common-license-for-apache2 See-also: https://lintian.debian.org/tags/copyright-not-using-common-license-for-apache2.html - - - - - 2dec42c5 by Aaron M. Ucko at 2023-09-04T22:39:43-04:00 Avoid explicitly specifying -Wl,--as-needed linker flag. Changes-By: lintian-brush Fixes: lintian: debian-rules-uses-as-needed-linker-flag See-also: https://lintian.debian.org/tags/debian-rules-uses-as-needed-linker-flag.html - - - - - 77519dae by Aaron M. Ucko at 2023-09-04T22:40:43-04:00 Finalize ncbi-blast+ 2.12.0+ds-4 for unstable. - - - - - 5 changed files: - debian/changelog - debian/control - debian/copyright - debian/rules - debian/source/lintian-overrides Changes: ===================================== debian/changelog ===================================== @@ -1,7 +1,20 @@ +ncbi-blast+ (2.12.0+ds-4) unstable; urgency=medium + + * debian/control: Drop build dependency on libpcre3-dev; PCRE2 support + isn't ready yet, but there's a convenience copy of classic PCRE that + will suffice for now. (Partly addresses #891197.) + * debian/source/lintian-overrides: Accommodate bracketed paths. + * Standards-Version: 4.6.2 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Refer to common license file for Apache-2.0. + * Avoid explicitly specifying -Wl,--as-needed linker flag. + + -- Aaron M. Ucko <[email protected]> Mon, 04 Sep 2023 22:40:42 -0400 + ncbi-blast+ (2.12.0+ds-3) unstable; urgency=medium * d/patches/optin_usage_report change usage reports sending over - internet strategy to optin (disabled by default unless specified) + internet strategy to optin (disabled by default unless specified) (Closes # 1005279). -- Olivier Sallou <[email protected]> Thu, 10 Feb 2022 12:17:56 +0000 @@ -11,7 +24,7 @@ ncbi-blast+ (2.12.0+ds-2) unstable; urgency=medium * Clean up spurious release-status comment from 2.12.0+ds-1. * debian/patches/system_mbedtls_only: Patch out use of local mbed TLS headers, which formally rename all symbols. - + -- Aaron M. Ucko <[email protected]> Wed, 01 Dec 2021 23:36:32 -0500 ncbi-blast+ (2.12.0+ds-1) unstable; urgency=medium ===================================== debian/control ===================================== @@ -13,11 +13,10 @@ Build-Depends-Arch: 2to3, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, - libpcre3-dev, time, zlib1g-dev, procps -Standards-Version: 4.6.0 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-blastplus Vcs-Git: https://salsa.debian.org/med-team/ncbi-blastplus.git Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ ===================================== debian/copyright ===================================== @@ -40,6 +40,9 @@ License: Apache-2.0 WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. + . + On Debian systems, the full text of the Apache License, Version 2.0 can be + found in the file `/usr/share/common-licenses/Apache-2.0'. Files: c++/src/html/ncbi_menu.js c++/src/html/ncbi_menu_dnd.js ===================================== debian/rules ===================================== @@ -26,8 +26,6 @@ DEB_CONFIGURE_EXTRA_FLAGS += --with-symbols #export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie export DEB_CFLAGS_MAINT_APPEND=-Wall -pedantic -# Kept for the sake of backports, which can't rely on GCC 9+. -export DEB_LDFLAGS_MAINT_APPEND=-Wl,--as-needed include /usr/share/dpkg/architecture.mk include /usr/share/dpkg/buildflags.mk ===================================== debian/source/lintian-overrides ===================================== @@ -1,7 +1,7 @@ # Line length detection, nothing missing in source js files -ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu.js -ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu_dnd.js -ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu_dyn.js +ncbi-blast+ source: source-is-missing *c++/src/html/ncbi_menu.js* +ncbi-blast+ source: source-is-missing *c++/src/html/ncbi_menu_dnd.js* +ncbi-blast+ source: source-is-missing *c++/src/html/ncbi_menu_dyn.js* # JSON not evil license, related code is not present -ncbi-blast+ source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson10/license.txt -ncbi-blast+ source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson11/license.txt +ncbi-blast+ source: license-problem-json-evil *c++/include/misc/jsonwrapp/rapidjson10/license.txt* +ncbi-blast+ source: license-problem-json-evil *c++/include/misc/jsonwrapp/rapidjson11/license.txt* View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/84e9a187b0f9a95f292c9a640ec20509e02d4c14...77519daef0c13c73c6ad8b1d9a4a7dfe48cc97d1 -- View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/84e9a187b0f9a95f292c9a640ec20509e02d4c14...77519daef0c13c73c6ad8b1d9a4a7dfe48cc97d1 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
