Étienne Mollier pushed to branch master at Debian Med / python-pauvre
Commits: 97e75c64 by Étienne Mollier at 2023-09-06T22:17:50+02:00 pandas-2.0.patch: new: fix ftbfs with pandas 2.0. Closes: #1044070 - - - - - 5c8e6e4c by Étienne Mollier at 2023-09-06T22:18:29+02:00 d/copyright: bump packaging copyright year. - - - - - 988b0a75 by Étienne Mollier at 2023-09-06T22:19:03+02:00 ready to upload to unstable. - - - - - 4 changed files: - debian/changelog - debian/copyright - + debian/patches/pandas-2.0.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +python-pauvre (0.2.3-3) unstable; urgency=medium + + * pandas-2.0.patch: new: fix ftbfs with pandas 2.0. (Closes: #1044070) + * d/copyright: bump packaging copyright year. + + -- Étienne Mollier <[email protected]> Wed, 06 Sep 2023 22:18:51 +0200 + python-pauvre (0.2.3-2) unstable; urgency=medium * biopython-1.80.patch: add; migrate away from Bio.SubsMat. ===================================== debian/copyright ===================================== @@ -9,7 +9,7 @@ License: GPL-3+ Files: debian/* Copyright: 2020 Andreas Tille <[email protected]> 2021 Nilesh Patra <[email protected]> - 2020-2022 Étienne Mollier <[email protected]> + 2020-2023 Étienne Mollier <[email protected]> License: GPL-3+ License: GPL-3+ ===================================== debian/patches/pandas-2.0.patch ===================================== @@ -0,0 +1,20 @@ +Description: fix test failure with pandas 2.0 +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1044070 +Forwarded: https://github.com/conchoecia/pauvre/pull/47 +Last-Update: 2023-09-06 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-pauvre.orig/pauvre/functions.py ++++ python-pauvre/pauvre/functions.py +@@ -72,8 +72,8 @@ + self.features = pd.read_csv(self.filename, comment='#', + sep='\t', names=gffnames) + self.features['name'] = self.features['tags'].apply(self._get_name) +- self.features.drop('dunno1', 1, inplace=True) +- self.features.drop('dunno2', 1, inplace=True) ++ self.features.drop('dunno1', axis=1, inplace=True) ++ self.features.drop('dunno2', axis=1, inplace=True) + self.features.reset_index(inplace=True, drop=True) + # warn the user if there are CDS or gene entries not divisible by three + self._check_triplets() ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ 2to3.patch lsi-test-args.patch biopython-1.80.patch +pandas-2.0.patch View it on GitLab: https://salsa.debian.org/med-team/python-pauvre/-/compare/a4bce77d6e8bbb48710c16a94bc7e032ba98f85c...988b0a75cda29054a0d33d75a96613b0d64c6bd2 -- View it on GitLab: https://salsa.debian.org/med-team/python-pauvre/-/compare/a4bce77d6e8bbb48710c16a94bc7e032ba98f85c...988b0a75cda29054a0d33d75a96613b0d64c6bd2 You're receiving this email because of your account on salsa.debian.org.
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