Andreas Tille pushed to branch master at Debian Med / cnvkit
Commits: 19efac07 by Andreas Tille at 2023-11-27T17:01:56+01:00 Run test via pytest - - - - - ffb4457f by Andreas Tille at 2023-11-27T17:15:45+01:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,10 @@ -cnvkit (0.9.10-1) UNRELEASED; urgency=medium +cnvkit (0.9.10-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) - -- Andreas Tille <[email protected]> Tue, 04 Jul 2023 12:04:48 +0200 + -- Andreas Tille <[email protected]> Mon, 27 Nov 2023 17:11:05 +0100 cnvkit (0.9.9-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -9,16 +9,17 @@ Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, - python3-pyfaidx, - python3-biopython, - python3-pandas, - python3-numpy, - python3-pysam, - python3-scipy, - python3-matplotlib, - python3-future, - python3-pomegranate, - r-bioc-dnacopy, + python3-pytest <!nocheck>, + python3-pyfaidx <!nocheck>, + python3-biopython <!nocheck>, + python3-pandas <!nocheck>, + python3-numpy <!nocheck>, + python3-pysam <!nocheck>, + python3-scipy <!nocheck>, + python3-matplotlib <!nocheck>, + python3-future <!nocheck>, + python3-pomegranate <!nocheck>, + r-bioc-dnacopy <!nocheck>, # testing # poppler-utils provides pdfunite, needed for the tests poppler-utils <!nocheck> ===================================== debian/rules ===================================== @@ -3,6 +3,8 @@ export LC_ALL=C.UTF-8 export PYBUILD_NAME=cnvkit +export PYBUILD_BEFORE_TEST=ln -s $(CURDIR)/data {build_dir}/data; + include /usr/share/dpkg/pkg-info.mk %: @@ -14,13 +16,6 @@ override_dh_auto_install: done dh_auto_install -override_dh_auto_test: -ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) - cd test && ${MAKE} - cd test && ${MAKE} clean || /bin/true - rm -Rf test/build test/*.tsv -endif - override_dh_auto_clean: cd test && ${MAKE} clean || /bin/true # if [ -f cnvkit ]; then mv cnvkit cnvkit.py; fi View it on GitLab: https://salsa.debian.org/med-team/cnvkit/-/compare/f0b6cd065a00e4584e2ad9da26919ad0e4df5357...ffb4457f5caebb28329fb2f1f81ac6bf7bac5a40 -- View it on GitLab: https://salsa.debian.org/med-team/cnvkit/-/compare/f0b6cd065a00e4584e2ad9da26919ad0e4df5357...ffb4457f5caebb28329fb2f1f81ac6bf7bac5a40 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
